Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1754 ATGGTTTTGTCTGGGACACTCAGAAGGGTTTTCCGCCGTGCCCACAAAGTGAAAGGGGCTCCCGGGGGTGATTTGGACTTGGAAGCTGTGATTCCCAATCATTTCCGGTGCCCGGTGAGTCTGGATTTGATGAGAGATCCGGTGACTCTATCTACCGGAATCACCTACGACAGAGAGAGCATCGAGAAGTGGATCGAATCCGGTAACCGCAAGTGCCCGGTGACGAATCAGGTGCTTGTGAGCTCTCACATGATCCCAAATCACTCCATTCGGCGGATGATCCAAGATTGGTGCGTCGAGCATCGGTCTTATGGGATCGAGAGAATCCCCACGCCGAGAATACCTATTTCGCCTTATGAGGTTTCAGAGACTTGTTCGAGGATAGAGGCTGCAGTTCATCGTGGGGATGACCAGAAGTGCACAGAATTGGTGGCGAAGATCAAGGTTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGTATAGTGGAAAATGGGACTGGTTCTGTGTTGGCCTCTGCCTTTAAGTCTTTTGCGAGTAGTTCGATTGAGAAAAATGTGAGTGTTTTGGAGGAGATCTTGGGGGTATTGCCATGGATGTTCCCATTAGAAGAAGAAGCTACAACGAAGTTGGGGTCTGAAGCCTCTTTACGATGCATGGTTTGGTTCCTAAATGGTAATGACCTCTCAGCAAGGCAAAATGCAGCCTTGGCGCTCAAGGAAATGCCTGTGAAGGCATTGGCAAACACTGAAGGTGTTGTTGAAGCTTTGGTGAAAATGATTAGGGAGCCCATTGGACCTAGTGCTACCAAGGCAAGTTTGACAAAGATTTTCCACTTGGTTTCCTCATCAGAGGACAAAGAGAGAATCACACAGAGATTTGTGGAACTGGGTTTGGTTTCATTGTTACTAGAGGCCATTGTTGATGCAGAAAGAAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATCATATTTGTGATTGCAAAGAAGGAAAGGAAATGGCCATGGCAAATGCTCTAAGCTTACCTCTTGCAATCAAGAAGATTCTGAGGGTATCAGAGTTGGCAACGGGGTTTTCAGTCTCCATTCTTTGGAAGCTCTGTTACAAGGCAGATGAAGGCGTTCTGATTGAAGCACTTCAAGTGGGAGCATTTCAGAAGCTCTTGGTTTTGTTGCAGGTGGGTTGTGCCGAAAGCACAAAGGAGAAGATTACTGAGTTGTTGAAATCGTTGAATGCTTACAGGAGCAAAGCAGAGTGTGTTGATTCATCCTCGGATTTCAAGTACCTTAAGAAGCCCTTCTGA 1302 0.4708 MVLSGTLRRVFRRAHKVKGAPGGDLDLEAVIPNHFRCPVSLDLMRDPVTLSTGITYDRESIEKWIESGNRKCPVTNQVLVSSHMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPISPYEVSETCSRIEAAVHRGDDQKCTELVAKIKVWGKESERNKRCIVENGTGSVLASAFKSFASSSIEKNVSVLEEILGVLPWMFPLEEEATTKLGSEASLRCMVWFLNGNDLSARQNAALALKEMPVKALANTEGVVEALVKMIREPIGPSATKASLTKIFHLVSSSEDKERITQRFVELGLVSLLLEAIVDAERSICEKALGVLDHICDCKEGKEMAMANALSLPLAIKKILRVSELATGFSVSILWKLCYKADEGVLIEALQVGAFQKLLVLLQVGCAESTKEKITELLKSLNAYRSKAECVDSSSDFKYLKKPF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1754 433 Gene3D - 138 428 IPR011989 -
Glsi10g1754 433 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Glsi10g1754 433 SUPERFAMILY RING/U-box 28 107 - -
Glsi10g1754 433 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Glsi10g1754 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 108 IPR013083 -
Glsi10g1754 433 CDD RING-Ubox_PUB 32 82 IPR045210 -
Glsi10g1754 433 SUPERFAMILY ARM repeat 217 410 IPR016024 -
Glsi10g1754 433 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Glsi10g1754 433 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Glsi10g1754 433 PANTHER WDSAM1 PROTEIN 28 420 IPR045185 GO:0061630
Glsi10g1754 433 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1754 Glsi-ChrGlsi10 12089766 12091067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1754 21 433 U-box Gene Family AT5G37490 50.000 1.08e-133 390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1754 10 12089766 12091067 Glsi10g1754 10 12089766 12091067 CCT
Glsi10g1754 10 12089766 12091067 Glsi10g1754 10 12089766 12091067 ECH