Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1753 ATGACTAGAAAGAAGGTGAAACTCGCATTCATAACCAACGACTCTGCTAGAAAGGCTACATATAAGAAAAGGAAGAAAGGTTTGTTGAAGAAGGCAAGTGAACTCAGTACCCTTTGCGGGATAGAGGCATGTGTTATAGTTTATAGTCCCTATGATTCTCAACCCGAGGTTTGGCCATCCTCATTGGGGGTCCAAAGCGTGCTGGCCAGGTTCAGGGAAATTCCTCAGTTGGAGCAGAGCAAGAAGATGATGAACCAAGAGAGCTTCTTGAAGCAGAGGATTTTGAAAGCTAAAGAGCAGGTGAACAAACAGAAGAAGGAAAATAGGGAGAAGGAGATGACCCAGATCATGTTTCAGTACATTGGTGCAGGGAAGATTCTTCACAATTTGAGTATGGGTGATTTGAATGATCTGACTTGGGTGATTGAGCAGAGCCTCAAGGATATCAGTAGGAGAATGGAGGCACTGAACAAGAATAAGATGCCTCAGAATCAAATCCAAAGTCAGAGCCAACCCCAAGTGGTGGTAGCAGAAGCAGATGGTGCAGCGAAGAAGAAAGAGAAGGAACAGGTGAATCAGGGAATGGGGATGGAGATTATGAACTTGAGCGCCATGCAGAAGCAACAATGGTGTTTGATGAAAGTTCTAAATAATTGTGGAAGCATCAAAATTCGAAAATTGAATTGTAAGTTTTCAGTTGAATGA 705 0.4298 MTRKKVKLAFITNDSARKATYKKRKKGLLKKASELSTLCGIEACVIVYSPYDSQPEVWPSSLGVQSVLARFREIPQLEQSKKMMNQESFLKQRILKAKEQVNKQKKENREKEMTQIMFQYIGAGKILHNLSMGDLNDLTWVIEQSLKDISRRMEALNKNKMPQNQIQSQSQPQVVVAEADGAAKKKEKEQVNQGMGMEIMNLSAMQKQQWCLMKVLNNCGSIKIRKLNCKFSVE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1753 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Glsi10g1753 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Glsi10g1753 234 Coils Coil 87 115 - -
Glsi10g1753 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Glsi10g1753 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Glsi10g1753 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi10g1753 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1753 Glsi-ChrGlsi10 12088018 12089675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1753 1 156 Type I MADS-box Gene Family AT5G48670 63.057 5.95e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi10g1753 SRF-TF 5.3e-20 No_clan