Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1749 ATGGCGAAGCGGGTGGAGCCGAAGAAAGAGATTAAATGGAAGCAAAGTACCCCGTCCTCAAAATCTTCTTATTCTTCGTCATCGTCGTCTTCGGATGAGAGAGAGTATGAGGTGACGGACGTGAATGACCGGTTAAAAGGAAGCAGGTTCGAATTGATAGAAAACGAGTTAACTCGGAGGAAATTCAGTCGCGAAGCCGTGCTTAGCGGCATCCGAGGCTGCTCCAAAGACTTCGTTATTCTTCCCGATAGCAGGTGGTATTGGGCATGGACAAACTTCATATTGTTTTGGGCAGTGTACTCATCATTCTTTACCTCGATGGAGTTTGGATTTTTTCGTGGGCTGCCTGAGAATCTCTTTATACTGGACATTACTGGACAATTAGCTTTTCTTGTAGACATTGTTTTGCAGTTCTTTGTCGCTTATAGAGATAGTCAGACCTATCGTATGGTCTACAAGCGAACCCCTATAGCTCTGCGGTATCTAAAATCTAGCTTTATCTTTGATCTTCTTGGATGTATGCCTTGGGACATCATTTACAAGGCTTATGGTAGAAGAGAGGCAGTGAGGTACCTCCTGTGGATCAGATTATGTCGGGTGCGCAAAGTCACAGCTTTTTTCCAGAAGTTGGAAAAAGATATACGTATCAATTACATGTTTACTAGGATTATAAAACTTTTAGTGGTTGAACTGTTCTGCACGCACGTAGCTGCGTGTATCTTCTACTATTTGGCTACCACACTGCCTCCTTCCCAAGAGAGCTACACGTGGATAGGAAGTCTAAAGCTGGGTGACTATAGTTATTCAAATTTCAGAGACATTGGTCTTTGGAGGTGCTACACGACATCTTTATATTTTTCTGTTGTTACGATGACTACTGTTGGCTTTGGAGATATACATGCGGTCAATCTGAGGGAGATGATATTTGTAATGATATATGTTTCATTTGACATGGTTATTGGTGCTTATTTGATTGGTAACATAACGGCATTGATAGTCAAAGGATCAAAGACTGAAAAGTATAGGGACAAAATGAAGGATCTTATGAAATATATGAACAGAAACAGACTAGGAAGGGACATCCGTGAACGAATAAAAGGCCATGTGTGCTTACAGTACGAGAGTAGCTACACTGAAGCTGCCGTCCTTCAAGACATACCTATTTCTATTCGTGCGAAGATATCCCAGACATTATATTTGCCATACATAGAAAAGGTTTCTCTCTTTAAGGGTTGCTCGTCAGAATTTATCAATCAGATCGTTATTAGGCTCCATGAGGAGTTCTTTCTTCCAGGAGAAGTGATAATGGAATACGGAAATGTTGTAGACCAACTATACTTCGTCTGTCATGGTGTGCTGGAGAAAGTAGGCACAGGTGAAGATGGATCTGAAGAGACTGTTTCCCTTCTACAACCTTACAGTTCATTTGGAGAAATATCTGTTCTTTGTAATATACCTCAGCCATATACAGTTCGAGTTTGTGAACTATGTAGGCTTCTGCGGCTCGATAAACAATCATTCACAAATATTCTTGACGTATACTTTTACGATGGGAGGAAAGTATTAAACAACCTTCTAGAGGGGAAAGAATCTATTCATGATAAGCAATTGGAGTCAGACATCTTATTGCATATTGGAAAGCAGGAAGCTGAACTTGCTTTGAAGGTCAATAGTGCAGCTTTTCATGGGGACCTGTATCAGCTAGAAGGTTTGATTCGAGCTGGAGCCGATCCCAACAAGACTGATTATGATGGAAGGTCACCCTTGCATCTTGCAGCATCTAGAGGATTTGACGATATCACACTTTTCCTTATTCAGGAAGGTGTAGACATCAGTATTAGAGATAACTTTGGGAACACACCGTTACTTGAAGCTGTTAAGAATGGACATGATCGAATTGCTTCCTTGCTTGTTAGAAAAGGGGCTTCCTTGAGGATAGACAATGCTGGTAGTTTTCTATGTACAGCTGTTGCGAGGGGGGATTCAGATTATCTTAAAAGGCTATTATCTAATGACATGGATCCGAACTCGAAAGATTATGATTACCGGAGCCCTCTTCATGTTGCTGCTGCCGAAGGTTTATACTTCATGGCAAAGTTGCTATTGGAAGCAGGGGCTAGTGTTTTCAGTAAAGACAGATATGGAAATACGCCACTTGATGAAGCCAGGATGTGTGGAAATAAGAATATGATGAAACTGCTAGAAAAGGCCAAGTCTGCTCAGTTATTGGAATTCCCGAATCCCTCCCTAGAATTTACAGATAAAAAGAGAACAAAGAAATGCACATTTTTTCCTTTCCACCCATGGGATCCTAAAGAACATAGAAGATATGGAATTGTACTATGGATTCCACACACCATTGAGGAGCTGACAAAAACAGCAGCAGAGCAGCTGGAGTTTTCTACTGGTTCTTGTATTTTATCAGAAGATGCTGGTTTAATTACTGATGTGGACATGATTAAGGATGGCCAGAAGCTGTATTTAAGAAAAGCTCGCGTCTTAATGGTGGTTAGCAAACTTAGTGACCTTGGTGGAATATGGTATTCTTAG 2550 0.4106 MAKRVEPKKEIKWKQSTPSSKSSYSSSSSSSDEREYEVTDVNDRLKGSRFELIENELTRRKFSREAVLSGIRGCSKDFVILPDSRWYWAWTNFILFWAVYSSFFTSMEFGFFRGLPENLFILDITGQLAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSSFIFDLLGCMPWDIIYKAYGRREAVRYLLWIRLCRVRKVTAFFQKLEKDIRINYMFTRIIKLLVVELFCTHVAACIFYYLATTLPPSQESYTWIGSLKLGDYSYSNFRDIGLWRCYTTSLYFSVVTMTTVGFGDIHAVNLREMIFVMIYVSFDMVIGAYLIGNITALIVKGSKTEKYRDKMKDLMKYMNRNRLGRDIRERIKGHVCLQYESSYTEAAVLQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEYGNVVDQLYFVCHGVLEKVGTGEDGSEETVSLLQPYSSFGEISVLCNIPQPYTVRVCELCRLLRLDKQSFTNILDVYFYDGRKVLNNLLEGKESIHDKQLESDILLHIGKQEAELALKVNSAAFHGDLYQLEGLIRAGADPNKTDYDGRSPLHLAASRGFDDITLFLIQEGVDISIRDNFGNTPLLEAVKNGHDRIASLLVRKGASLRIDNAGSFLCTAVARGDSDYLKRLLSNDMDPNSKDYDYRSPLHVAAAEGLYFMAKLLLEAGASVFSKDRYGNTPLDEARMCGNKNMMKLLEKAKSAQLLEFPNPSLEFTDKKRTKKCTFFPFHPWDPKEHRRYGIVLWIPHTIEELTKTAAEQLEFSTGSCILSEDAGLITDVDMIKDGQKLYLRKARVLMVVSKLSDLGGIWYS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1749 849 Pfam Ankyrin repeats (3 copies) 654 734 IPR002110 GO:0005515
Glsi10g1749 849 Pfam Ankyrin repeats (3 copies) 559 646 IPR002110 GO:0005515
Glsi10g1749 849 MobiDBLite consensus disorder prediction 1 15 - -
Glsi10g1749 849 SMART ANK_2a 648 677 IPR002110 GO:0005515
Glsi10g1749 849 SMART ANK_2a 584 613 IPR002110 GO:0005515
Glsi10g1749 849 SMART ANK_2a 681 710 IPR002110 GO:0005515
Glsi10g1749 849 SMART ANK_2a 617 646 IPR002110 GO:0005515
Glsi10g1749 849 SMART ANK_2a 714 743 IPR002110 GO:0005515
Glsi10g1749 849 SUPERFAMILY cAMP-binding domain-like 336 525 IPR018490 -
Glsi10g1749 849 Pfam Ion transport protein 90 333 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi10g1749 849 MobiDBLite consensus disorder prediction 1 39 - -
Glsi10g1749 849 Pfam Cyclic nucleotide-binding domain 428 512 IPR000595 -
Glsi10g1749 849 Gene3D Jelly Rolls 392 530 IPR014710 -
Glsi10g1749 849 PRINTS Ankyrin repeat signature 585 600 IPR002110 GO:0005515
Glsi10g1749 849 PRINTS Ankyrin repeat signature 697 711 IPR002110 GO:0005515
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Glsi10g1749 849 ProSiteProfiles KHA domain profile. 760 846 IPR021789 -
Glsi10g1749 849 ProSiteProfiles cAMP/cGMP binding motif profile. 408 528 IPR000595 -
Glsi10g1749 849 SMART cnmp_10 408 526 IPR000595 -
Glsi10g1749 849 SUPERFAMILY Voltage-gated potassium channels 82 333 - -
Glsi10g1749 849 SUPERFAMILY Ankyrin repeat 557 736 IPR036770 -
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat region circular profile. 681 713 - -
Glsi10g1749 849 CDD CAP_ED 408 522 IPR000595 -
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat profile. 681 713 IPR002110 GO:0005515
Glsi10g1749 849 Gene3D - 650 742 IPR036770 -
Glsi10g1749 849 PANTHER POTASSIUM CHANNEL AKT1 61 829 IPR045319 GO:0005249|GO:0006813
Glsi10g1749 849 FunFam Potassium channel KAT2 396 533 - -
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Glsi10g1749 849 FunFam Potassium channel SKOR 88 333 - -
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Glsi10g1749 849 Gene3D - 89 334 - -
Glsi10g1749 849 Pfam KHA, dimerisation domain of potassium ion channel 759 828 IPR021789 -
Glsi10g1749 849 Gene3D Helix hairpin bin 335 391 - -
Glsi10g1749 849 ProSiteProfiles Ankyrin repeat region circular profile. 617 648 - -
Glsi10g1749 849 PRINTS EAG/ELK/ERG potassium channel family signature 280 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g1749 849 PRINTS EAG/ELK/ERG potassium channel family signature 324 333 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g1749 849 PRINTS EAG/ELK/ERG potassium channel family signature 123 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g1749 849 PRINTS EAG/ELK/ERG potassium channel family signature 232 242 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g1749 849 MobiDBLite consensus disorder prediction 16 32 - -
Glsi10g1749 849 Gene3D - 543 649 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1749 Glsi-ChrGlsi10 12068868 12080633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1749 655 744 Ion Channels AT5G37500 33.036 1.85e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1749 10 12068868 12080633 Glsi10g1749 10 12068868 12080633 ECH