Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1733 ATGAAGTCTCTGCTGCCACTCTCCTTGTTGGTTCCTGCTTTCTCACTGTTTCTCTTCGCCGTTGTAGGCGCAGATCTAGCATCTGATAAAGCCGTCCTGGAGGCTCTGCGTGCCGCAGTGGGTGGCCGTTCCCTCCTTTGGAACCTCACTCAGACCAGTCCCTGCTCATGGACTGGTGTGTTTTGCCAGAACAACAGGGTCACTCTGTTGCGACTCCCTGGTATGGGTCTCTCTGGGAAGCTCCCTCTGGGAATTGGGAACCTTACCCAGCTTCAGACTCTGTCTCTCCGCTTCAACGCACTCTCTGGGTCAATTCCTCCTGACTTTGTCAATCTTGTTAGACTTCGGAACCTTTATTTGCAGAGCAATTTCTTCTCTGGTGAAATCCCTGATTTCCTTTACAGTATGCAGAACTTGGTTCGTTTGAATTTAGCTGGGAACAATTTCAGTGGTGAGATCTCGCCCAACTTTAATAACCTCACGAGGTTAGCTACCCTCTATTTGGAGAACAACCATTTGACTGGGTCCATTCCTGACCTGAATGCCCCACCTCTCGAACAGTTCAATGTTTCATTCAACCAGCTAAACGGGTCCATTCCCTCAAGGTTTTCGCGTTTGAATGCGAGTGCTTTTGTGGGGAATTCGGTTTGCGGGAAGCCCTTGCAAGCATGCCCTGGAACGGAGAGTGGGAAGAAGAAGTTATCTGGTGGAGCAATTGCAGGGATTGTAATTGGTTCTTTGATCGGACTTGTGTTGATTCTACTCATTCTGTTCTTCCTGTGTCGAAAAAGGAGCAGTAAAGACAAGGATTCCAGGGATACCGCACCAGCGAAGCACGTTGAGGTTGAAGTTCCCCAAGAAAAGATAGCAAGAGATAGTGAGGATGCTGCTGCAAGTCATTCAGCAACAGCCAGAGGTGATGTTAAGAATGGAAGGAGTAAGAGTTTGGTGTTTTTTGGGAATGTCATCAAAGTGTTTGATCTAGAGGATTTGTTAAGAGCATCAGCTGAAGTACTGGGGAAGGGGACCTTTGGAACCACATATAAGGCTACTTTAGAAATGGGTATGGTTGTGGCAGTGAAGAGATTGAAGGATGTAACCGCACCGGAAAGTGAATTTAGAGACAAAATTGAGGAAGTAGGGAAGATGGTTCATGAGAACTTGGTCCCGCTCAGAGGTTACTATTTTAGCAGGGATGAAAAGCTCCTTGTCTATGATTACATGCCCATGGGAAGCTTATCTGCCCTTTTACATGCTAATAACGGAGCTGGCAGGACTCCACTAAATTGGGAAACAAGGTCTGCCGTTGCCCTCGGTGCTGCCCGAGGGATTGCATACCTACACTCACACAATCCTACAGCCTCCCATGGAAATATCAAGTCATCTAATATCCTTCTCACCAAAACTTATGAAGCTCGTGTTTCTGACTTTGGCCTTGCTCAGCTTGCTCTCCCAACCTCTACACCCAACCGCGTTTCTGGTTACCGTGCCCCGGAGGTCACAGATGCTCGCAAAGTATCCCAAAAAGCGGATGTCTATAGCTTTGGTATAATGCTTTTGGAGCTGCTTACAGGGAAGGCTCCAACACATTCCTCCTTGAATGAAGAAGGGGTAGACCTCCCAAGATGGGTCCAATCTATTGTTCAAGAGGAGTGGAACACAGAGGTTTTTGACATGGAGCTTCTTAGATACCAGAATGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCACTTGAATGTACTGCTCAGTATCCTGACAAGCGACCTTCAATGGATGTGGTGGCAAGCAGAATTGAGGAGATTTGTCATTCTAGCTTAGAGAAAGAAGAAGAGAAAATTCACCATTCGTTTAATGATGCAGACAATGGATTTTCCCCACTTTAG 1887 0.4695 MKSLLPLSLLVPAFSLFLFAVVGADLASDKAVLEALRAAVGGRSLLWNLTQTSPCSWTGVFCQNNRVTLLRLPGMGLSGKLPLGIGNLTQLQTLSLRFNALSGSIPPDFVNLVRLRNLYLQSNFFSGEIPDFLYSMQNLVRLNLAGNNFSGEISPNFNNLTRLATLYLENNHLTGSIPDLNAPPLEQFNVSFNQLNGSIPSRFSRLNASAFVGNSVCGKPLQACPGTESGKKKLSGGAIAGIVIGSLIGLVLILLILFFLCRKRSSKDKDSRDTAPAKHVEVEVPQEKIARDSEDAAASHSATARGDVKNGRSKSLVFFGNVIKVFDLEDLLRASAEVLGKGTFGTTYKATLEMGMVVAVKRLKDVTAPESEFRDKIEEVGKMVHENLVPLRGYYFSRDEKLLVYDYMPMGSLSALLHANNGAGRTPLNWETRSAVALGAARGIAYLHSHNPTASHGNIKSSNILLTKTYEARVSDFGLAQLALPTSTPNRVSGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSIVQEEWNTEVFDMELLRYQNVEEEMVKLLQLALECTAQYPDKRPSMDVVASRIEEICHSSLEKEEEKIHHSFNDADNGFSPL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1733 628 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Glsi10g1733 628 ProSiteProfiles Protein kinase domain profile. 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1733 628 CDD STKc_IRAK 339 602 - -
Glsi10g1733 628 PANTHER OS05G0588300 PROTEIN 13 604 - -
Glsi10g1733 628 SUPERFAMILY Protein kinase-like (PK-like) 337 598 IPR011009 -
Glsi10g1733 628 MobiDBLite consensus disorder prediction 267 295 - -
Glsi10g1733 628 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Glsi10g1733 628 Pfam Protein kinase domain 336 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1733 628 FunFam pollen receptor-like kinase 1 302 407 - -
Glsi10g1733 628 SUPERFAMILY L domain-like 47 207 - -
Glsi10g1733 628 FunFam Probable inactive receptor kinase At1g48480 408 610 - -
Glsi10g1733 628 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Glsi10g1733 628 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Glsi10g1733 628 Gene3D Phosphorylase Kinase; domain 1 299 407 - -
Glsi10g1733 628 MobiDBLite consensus disorder prediction 267 307 - -
Glsi10g1733 628 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Glsi10g1733 628 Gene3D Transferase(Phosphotransferase) domain 1 408 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1733 Glsi-ChrGlsi10 11899557 11902332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1733 25 602 Receptor kinase-like Gene Family AT1G48480 60.131 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi10g1733 Pkinase 2.8e-37 CL0016