Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1730 ATGGGAAGGCAACCCTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCGTGGACAGCAGAGGAAGACAAGAAGCTCATCAACTTCATCCTCACTAACGGTCAATGTTGCTGGAGAGCTGTTCCTAAGCTTGCAGGGCTGTTGAGGTGTGGGAAGAGTTGCAGGCTGAGATGGACGAACTACCTAAGGCCAGATTTAAAGAGAGGTCTTCTCTCAGAACACGAAGAGAACATGGTTATTGATCTTCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCTTCCCAGCTTCCTGGAAGGACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGAAAAAGCTAAAAAGAATGGGCATTGATCCTGTCACCCACAAGCCTCTCCCTGCTATAACCGAGCAAACCCAAATCCCACAAAATCATCAGCAAAATGACTTAATACAAGATCAGCAGCTATCTTGGACAGCTAACCCGAAATTTGAACTTGAAATTGATCAAAATATAGAGCCAGAAAAGCCAGAGACATCATATGAGTCATCAACCTTAACTGAACCAAAAGAGGATGAGAAAATTGAAACAACCCCATTTGACACAGTGGAGATCATGAATGGTTTCTGCACAGATGAAGTGCCAATTATAGAACCTCACGAAATTCTAATGCCCCCTGCTCCTTCCTCTTCATCAATCTGTTCATCATCATCATCATCATCTTCTTCTTCTGCAAATTCATCCTACTTCCTAGGAGACCTGCAACTCCCAGATTTTGAATGGTCTTGTAATTATAATGATAACAAAATCAACAGCAACAACAGCAGCAGCAGCAGTATGGCCTTGTGGGATTATGATTTTATTAGAAGTTGGGATTTGCTGATTAATGATGATGACGATGGCGATAGAAAGCAAGTGTTTGATTCTGCTCTCATTCAGCATCCAAGAATGGTTACGGATCAAGAATCCTGGGCATATGGGTTGTTTTGA 981 0.4251 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEHEENMVIDLHAQLGNRWSKIASQLPGRTDNEIKNHWNTHIKKKLKRMGIDPVTHKPLPAITEQTQIPQNHQQNDLIQDQQLSWTANPKFELEIDQNIEPEKPETSYESSTLTEPKEDEKIETTPFDTVEIMNGFCTDEVPIIEPHEILMPPAPSSSSICSSSSSSSSSSANSSYFLGDLQLPDFEWSCNYNDNKINSNNSSSSSMALWDYDFIRSWDLLINDDDDGDRKQVFDSALIQHPRMVTDQESWAYGLF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1730 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi10g1730 326 FunFam MYB transcription factor 11 67 - -
Glsi10g1730 326 CDD SANT 16 61 IPR001005 -
Glsi10g1730 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi10g1730 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi10g1730 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi10g1730 326 PANTHER F14D16.11-RELATED 1 272 - -
Glsi10g1730 326 FunFam Myb transcription factor 71 133 - -
Glsi10g1730 326 SMART sant 13 63 IPR001005 -
Glsi10g1730 326 SMART sant 66 114 IPR001005 -
Glsi10g1730 326 Gene3D - 11 67 - -
Glsi10g1730 326 CDD SANT 71 112 IPR001005 -
Glsi10g1730 326 Gene3D - 70 148 - -
Glsi10g1730 326 MobiDBLite consensus disorder prediction 164 191 - -
Glsi10g1730 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi10g1730 326 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Glsi10g1730 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1730 Glsi-ChrGlsi10 11877139 11878722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1730 1 326 MYB Transcription Factor Family AT5G16600 47.472 1.13e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1730 Myb_DNA-binding 9.4e-13 CL0123