Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1725 ATGGCTACTTCCTTGGATATGTCACTTGATGCTAGGATAAAGAACAGAAGTAACAGGGAGAGAGGTAGAGGACGTGGCAGAAGCCGCCGTGGCCGTGGACCAGGTCGGAATCTTAGTGGTGGAAGAATGCCTGGTGCAGCTCAGAGAGCTCCTTTTGCAATTAATGCTCGGCCATCATCCTATGCCATTGCCAAGTCTATTCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTGTTTGAGGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGGAGTTGGAACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGATGATATAAGGGAACTTTTCTCTGAGATTGGAGACTTAAAGCGCTATGCTGTTCACTATGACAGAAATGGACGTCCTAGCGGTTCAGCTGAAGTTGTCTATACCAGAAGAAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTACTTCTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCTAATGCAGAATTGCCTGTATCAGCTCGTGTGAATGTGACTGGGGTAAATGGGCAGAGGAAGAGGACAGTTGTTATGACTCCTGGAGGAGGTCGACCTGGAGGTCCTACTTTTTTTAATCGTGGCATGGGCCGTGGACGTCGTGGTGGTGCAAGGAGTGGCTTTGGGAGTGGACGTGGTCGAGGCCGTGGACTTGGTAGGGGCCGGGGTCGTGGGAGGAGGGATGCTGTTGAGAAGTCAGCAGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGCAGATTTCTTGA 816 0.489 MATSLDMSLDARIKNRSNRERGRGRGRSRRGRGPGRNLSGGRMPGAAQRAPFAINARPSSYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVGVGTKLYVSNLDHGVTNDDIRELFSEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVSARVNVTGVNGQRKRTVVMTPGGGRPGGPTFFNRGMGRGRRGGARSGFGSGRGRGRGLGRGRGRGRRDAVEKSAEELDKELETYHAEAMQIS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1725 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Glsi10g1725 271 Gene3D - 94 172 IPR012677 -
Glsi10g1725 271 Pfam C-terminal duplication domain of Friend of PRMT1 213 265 IPR025715 -
Glsi10g1725 271 MobiDBLite consensus disorder prediction 195 256 - -
Glsi10g1725 271 Coils Coil 246 266 - -
Glsi10g1725 271 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 269 - -
Glsi10g1725 271 SMART rrm1_1 97 169 IPR000504 GO:0003723
Glsi10g1725 271 MobiDBLite consensus disorder prediction 18 32 - -
Glsi10g1725 271 CDD RRM_THOC4 96 170 - -
Glsi10g1725 271 SMART FoP_duplication_2 198 271 IPR025715 -
Glsi10g1725 271 MobiDBLite consensus disorder prediction 1 48 - -
Glsi10g1725 271 MobiDBLite consensus disorder prediction 241 256 - -
Glsi10g1725 271 SUPERFAMILY RNA-binding domain, RBD 19 170 IPR035979 GO:0003676
Glsi10g1725 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1725 Glsi-ChrGlsi10 11843867 11847211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1725 61 211 Eukaryotic Initiation Factors Gene Family AT1G49760 28.302 7.05e-10 57.4