Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1708 ATGGAGAAGAGCTTGGGAGTAAGAAAAGGGACATGGACGGTGGAAGAAGATGAGCTTCTGAGGGCCTGCATTCATAAGTACGGCCAAGGAAAATGGCATCTGGTTCCTCAAAGAGCAGGTTTGAAGAGGTGTCGGAAAAGCTGTAGATTGAGATGGTTGAATTACCTAAACCCTGAAATTAAGAGAGGAGATTTCACTGAGCCCGAAGCTGATATGATTTTTAGGTGCCATAAACTCCTGGGGAACAGATGGTCCTTGATTGCTGGAAGACTTCCAGGAAGAACTGCAAATGATGTGAAAAATTATTGGTACAGCAAATTCCGCAATAAGGAAGCCTGTAACAAGAAAGAAAAGAAAGAAGAAGCTAAGGAGAGCAACACCGTGAAAACCCATGTTGTGATCAAACCTAAACCACGGACATTCTCAAAGAATTCCCCATGGTTGAGACGCAGACCCATGTTTGTGGATGATGCTAATGTTAGGGCAAGAGAGGGCACCACAGAACTGCTGGCAAATGATTCTGCTCAACCGTGTTTTGGGGAGGTGTCAAAATCAGAGGATTGGACAGAGTGGTGGAAAAGTTTGTTAGAAGACAAGGAAGGAGACGAGGGGAAATCCATCATGGAAATCTGGGACAACCACCCCTTCATGGAGGGCCAAAGTGGTTGGGGAGACTGCTCTTTGAATGTGAACCATTGGGATTTTCCATGA 711 0.4529 MEKSLGVRKGTWTVEEDELLRACIHKYGQGKWHLVPQRAGLKRCRKSCRLRWLNYLNPEIKRGDFTEPEADMIFRCHKLLGNRWSLIAGRLPGRTANDVKNYWYSKFRNKEACNKKEKKEEAKESNTVKTHVVIKPKPRTFSKNSPWLRRRPMFVDDANVRAREGTTELLANDSAQPCFGEVSKSEDWTEWWKSLLEDKEGDEGKSIMEIWDNHPFMEGQSGWGDCSLNVNHWDFP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1708 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Glsi10g1708 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 135 - -
Glsi10g1708 236 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Glsi10g1708 236 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Glsi10g1708 236 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Glsi10g1708 236 SMART sant 8 58 IPR001005 -
Glsi10g1708 236 SMART sant 61 109 IPR001005 -
Glsi10g1708 236 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Glsi10g1708 236 CDD SANT 65 104 IPR001005 -
Glsi10g1708 236 CDD SANT 11 56 IPR001005 -
Glsi10g1708 236 Gene3D - 64 135 - -
Glsi10g1708 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Glsi10g1708 236 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Glsi10g1708 236 FunFam Myb transcription factor 9 61 - -
Glsi10g1708 236 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1708 Glsi-ChrGlsi10 11563071 11564183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1708 6 197 MYB Transcription Factor Family AT1G66370 48.357 6.78e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1708 Myb_DNA-binding 7.8e-16 CL0123