Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1707 ATGCATCAACCCACTGCCTCTTTGATTTCATCTAACTTGCTTCATCATGGTCCTTCTATAATGCTGGCCGATATTGCACGGTTTGGAGCAAAACGGAAGAGTTGTCAGATCCCACTCTATCCAGCTGCAGCCTTAATATTGAGTTGGATTGCCAATGAATCCATCAACAACATGCTGGCCACTTCTACTATTTGGATAGAGAAGAGCCCAGGGTTGAGGAAAGGTGCATGGACAGAACAGGAAGATAATCTTCTCAGGGCTTGCATTCAAAAGCATGGGGAGGGAAAATGGCATCTGGTTCCTCGTAGAGAAGGATTGTATAGCAAATTGCGCAATAAGGAATTCTCTAACAAGAAAGACAAGAAAGCAGAAGCTAAGGAAAGCATCACCGTGAAAACCCATGTTGTAATCAAACCTAAACCACGGACATTCTCAAAAAATTCCCCATGGTTGAAACGCAGACCCATGTTTGTGGATGATGCTAATGTTAGTGCAAGAGAGGGCAACTCAGAACTGTTGGCAAATGATCCTGCTCAACTATATATGTCTTGCTTTAACCGCCTCCACAACAACAACGAGAACCCCCCATTTCAATCACACTGCCAGCCCCTTCCCCCTCTCGGTGGCCGGGGTGCTCTTCCATCCGCCGGCTATACTCCTTCTGACATCCTCTTCCTTGCCGGTGGTGGTGGTTCCCTCCCTTCAGAGATTTTTTGGCATCTGGGTCTTGATCTGTTTTAG 741 0.4642 MHQPTASLISSNLLHHGPSIMLADIARFGAKRKSCQIPLYPAAALILSWIANESINNMLATSTIWIEKSPGLRKGAWTEQEDNLLRACIQKHGEGKWHLVPRREGLYSKLRNKEFSNKKDKKAEAKESITVKTHVVIKPKPRTFSKNSPWLKRRPMFVDDANVSAREGNSELLANDPAQLYMSCFNRLHNNNENPPFQSHCQPLPPLGGRGALPSAGYTPSDILFLAGGGGSLPSEIFWHLGLDLF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1707 246 SMART sant 73 116 IPR001005 -
Glsi10g1707 246 Pfam Myb-like DNA-binding domain 74 103 IPR001005 -
Glsi10g1707 246 SUPERFAMILY Homeodomain-like 69 110 IPR009057 -
Glsi10g1707 246 CDD SANT 76 103 IPR001005 -
Glsi10g1707 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 103 IPR017930 -
Glsi10g1707 246 ProSiteProfiles Myb-like domain profile. 69 103 IPR001005 -
Glsi10g1707 246 Gene3D - 71 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1707 Glsi-ChrGlsi10 11555853 11560673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1707 69 106 MYB Transcription Factor Family AT1G56650 73.684 1.25e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi10g1707 Myb_DNA-binding 1.1e-06 CL0123