LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1702	ATGGGTTTCTCCCAAGGAACCTTCCCTGATTCTTTGGAGCCTTCCAATGCACAAAATGCTCCTGACGGACCCCATGCAGCTGCAGATCACTACTGTCACTACAATAAGCTTAAATTCAGAACCATTTTGAGAAAAATGATCTGGGAGATTGGGTTTGCCTGTATTGCCCCGCCCAGTCGCCGGCGGAACGCCGGAACGATTCAGGGTCAAGAAAAAAACGACGGCAATATCCACAAGAAAACAAATTTAGAGCACAACAAGGCATGGCTTCTGGCGGAGTCTGGTGGGTGTGCAGCAGAATTGACAAATGCTGACCCACAATCTGTTCATTCGTCTTTCAGGTTCAGCTTCTGTTCTCAGGTTGAGCTGGAATCCTTGAACATGAGTTCTTCCGCTGCTGCAACGGTTTTGATGGTGAATTTGGACAGTGGAATGAGTGAATCTCTAGCTCGTGAGCTGAAATGGCGGAGAATAAAGGCATTGGAGAAAAGCATATTTCCAGTGACCAATACTTTGATCAGATTCAGCTATGGTGAAATTCTATCTGCTACCCGAAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGGGCCTTGAGCTGTGTTTTTAGAGGAAGAGTCGGGCTTTTGAGGACTGCAGTAGCGATTAAACGGTTGGACAAGGAAGACAAGGAATGTGCAAAGGCGTTTTGTAGAGAACTGATGATTGCTAGTTCTCTTCACAACCCAAACGTTGTTCCTCTAGTGGGTTTTTGTATTGATCCAGAGGAGGGCTTCTTTTTGGTTTACAAGTTTGTCTCAGGGGGAAGCTTAGAGCGTCACTTGCATGGGAGGAAGAAGGGTGCGAAGGGTAGTTCCCCACTTCCATGGACTACGAGGTATAAAGTTGCGATTGGGATCGCCGAAGCCGTGGCTTATCTGCATAATGGAACGAAACGATGTGTTGTTCACAGAGACATTAAGCCCTCAAACATTCTTCTTTCCTCTAGAAAGATTCCCAAGTTATGTGATTTTGGATTAGCTACATGGACTTCTGCACCTTCCGTAAATTTCCTTTGCAAAACTGTCAAAGGAACATTTGGTTATTTGGCTCCCGAGTATTTTCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGGGTGGTATTATTGGAACTCATAACTGGCCGGAAGCCAATTGAAGTAAAAAGGCCACCAGGAGAGGAGAATTTGGTCCTATGGGCTAAACCATTGCTTCAGAAAGGGAAAGGAGCCATAGAAGAGTTGCTTGATCCTCATCTCAAGCGCAATTTGAAAAGCTCGAATCAGATGGGTCGAATGATAGAAGCTGCAGCTGCCTGTGTCTCAAATGAAGAATCTCGGAGACCTGCCATACACGAGATTATTGCAATACTGAAAGGTGAAGAACCTGTTTTCTCTAAAAGGTGGAAGTCTGCTTTTCTTGGGAATGGATGCGTAATTGATTGTTGCTCTCAGGTACAACAAACAAATAATGACATGAAAAGTCACTTGGCCTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGGTCGTTAA	1578	0.4455	MGFSQGTFPDSLEPSNAQNAPDGPHAAADHYCHYNKLKFRTILRKMIWEIGFACIAPPSRRRNAGTIQGQEKNDGNIHKKTNLEHNKAWLLAESGGCAAELTNADPQSVHSSFRFSFCSQVELESLNMSSSAAATVLMVNLDSGMSESLARELKWRRIKALEKSIFPVTNTLIRFSYGEILSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKECAKAFCRELMIASSLHNPNVVPLVGFCIDPEEGFFLVYKFVSGGSLERHLHGRKKGAKGSSPLPWTTRYKVAIGIAEAVAYLHNGTKRCVVHRDIKPSNILLSSRKIPKLCDFGLATWTSAPSVNFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEVKRPPGEENLVLWAKPLLQKGKGAIEELLDPHLKRNLKSSNQMGRMIEAAAACVSNEESRRPAIHEIIAILKGEEPVFSKRWKSAFLGNGCVIDCCSQVQQTNNDMKSHLALAMLGVSEFEDDDYLYGR	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1702	525	MobiDBLite	consensus disorder prediction	1	18	-	-
	Glsi10g1702	525	SUPERFAMILY	Protein kinase-like (PK-like)	167	467	IPR011009	-
	Glsi10g1702	525	Gene3D	Phosphorylase Kinase; domain 1	172	264	-	-
	Glsi10g1702	525	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	314	326	IPR008271	GO:0004672\|GO:0006468
	Glsi10g1702	525	PANTHER	OS08G0249100 PROTEIN	136	478	IPR046958	-
	Glsi10g1702	525	SMART	serkin_6	187	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1702	525	FunFam	Putative receptor-like serine/threonine-protein kinase	265	481	-	-
	Glsi10g1702	525	Pfam	Protein kinase domain	188	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1702	525	MobiDBLite	consensus disorder prediction	1	24	-	-
	Glsi10g1702	525	ProSiteProfiles	Protein kinase domain profile.	187	474	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1702	525	FunFam	probable serine/threonine-protein kinase PBL7	148	264	-	-
	Glsi10g1702	525	Gene3D	Transferase(Phosphotransferase) domain 1	265	478	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1702	Glsi-ChrGlsi10	11534771	11537191	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1702	175	470	Trihelix Transcription Factor Family	AT1G70460	42.617	3.91e-69	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Glsi10g1702		Pkinase	1.9e-42	CL0016