Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1700 ATGGCGCTTGCCAAAGACCGAATTCCACATGACCTATTAGAGATTACCTCTCTGACGGCTCATGGCGTCAGTGAGTACCCCAAATCTGTGCTTGAGGAAGAGGATGGATCGCAGAGCACTAATGGGTTCAGCAATGATTCAGCTATATCCCATTCTCCTCCTCTTTGTGGAAGTGGAAATGGGTATGTTTCTAAGGGCTCAAACTATCAACCTAAGGAAGCACAATCGCAATCTCTGATTAATTTCAAAGCCAATGGGTACAGTAATCTCATAAATGCTGGCGAATCTTTGCTTAGCTTTCAGCAGAGCAGCTACATGAAGAATAACAATCCGAAGGAGTACTGTGTCTGGGAGAATAGCTTGCATCAAGGTTATAATCAGTGGGATCAGATTAGCCCTAGAAGCATTTCAAACCCACGCTTGATGCCGGATTTCAGTTGCATTCAAACTGCTAGTGGCTATGGTTCCATAGTCAATGGTGCTAAAGAAAAGCAGTATGGTGAAAGTTCATATGGATGGCTACACTCTGAATCAACTATCCCTCCTGATAGCTTGCAGGAGTCTGGAGGAGCACAAGAAGTATCCCTCCATAAGCGCCTTTCTATGGGAGAGAGCATGCTAGCCTCGAAGAAGCAATGTACTGCTGCAAGTAAAACGCCAAAGTCAAGCCCATCCAAAGATCCTCAAAGTATTGCAGCCAAGAATAGAAGAGAGAGGATAAGCGAGCGGCTCAAGATACTACAAGAACTGGTTCCCAATGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCCATTACTTATGTAAAGTTTCTGCAATTGCAAGTGAAGGTATTGGCAACTGATGAATTTTGGCCAATCCAAGGAGGAAAAGCTCCTGATATTTCTCAAGTAAAAGAAGCCATCGATGCCATTCTTTCAACCCAACGGGACAGAAACTCAATCTCAAAGTAG 957 0.441 MALAKDRIPHDLLEITSLTAHGVSEYPKSVLEEEDGSQSTNGFSNDSAISHSPPLCGSGNGYVSKGSNYQPKEAQSQSLINFKANGYSNLINAGESLLSFQQSSYMKNNNPKEYCVWENSLHQGYNQWDQISPRSISNPRLMPDFSCIQTASGYGSIVNGAKEKQYGESSYGWLHSESTIPPDSLQESGGAQEVSLHKRLSMGESMLASKKQCTAASKTPKSSPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAITYVKFLQLQVKVLATDEFWPIQGGKAPDISQVKEAIDAILSTQRDRNSISK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1700 318 FunFam Transcription factor bHLH83 222 281 - -
Glsi10g1700 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 282 IPR036638 GO:0046983
Glsi10g1700 318 MobiDBLite consensus disorder prediction 29 50 - -
Glsi10g1700 318 MobiDBLite consensus disorder prediction 209 236 - -
Glsi10g1700 318 Pfam Helix-loop-helix DNA-binding domain 231 274 IPR011598 GO:0046983
Glsi10g1700 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Glsi10g1700 318 CDD bHLH_AtIND_like 225 287 - -
Glsi10g1700 318 SMART finulus 230 279 IPR011598 GO:0046983
Glsi10g1700 318 Gene3D - 219 281 IPR036638 GO:0046983
Glsi10g1700 318 MobiDBLite consensus disorder prediction 209 230 - -
Glsi10g1700 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 307 - -
Glsi10g1700 318 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1700 Glsi-ChrGlsi10 11501580 11503010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1700 52 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.230 1.24e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g1700 HLH 1.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1700 10 11501580 11503010 Glsi10g1700 10 11501580 11503010 CCT
Glsi10g1700 10 11501580 11503010 Glsi10g1700 10 11501580 11503010 ECH