Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1699 ATGGACAGTTCTTCTCCTTCTTCCTCGGATGGTCTTAGCCCCGACACGAATTTCGAAGTTGATACACCCAGAACCCCCGTCGCCGTCCGCCGAGCCCTACAGCTCCTTCGATCGGACGACCCCGATTTGAAGCTCCAAGCCGCTCGGGATATTCGGCGGCTCACCAAGACCTCCCACCGCTGTCGGCGCCAGCTCTCTGATGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACATGAATCGGCTCTTCTTGCCTTGCTTAACCTTGCCGTCAAAGACGAAAAGAATAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCGATAATTATTTTCCTCAAGTCACACAATATAAATCTGCAGGAGTATGCAACTGCATCTCTGCTCACTCTATCTGCCTCTACAACCAATAAGCCAGTTATTTGTGCTTCTGGGGCCATTCCTCTTCTTGTGGAGATCCTTAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAATTTATCAACCCACCCTAATAATCTCAGCACCGTTCTTGAAACAAATCCAATCCCTTTTATAGTTAATCTTCTTAAAACCTGCAAGAAATCCTCAAAAACAGCTGAGAAATGCTGTGCTTTGATAGAATCTTTAGTCGGTTTTGATGAGGGGAGGACTGCCTTGACATCCGAAGAAGGCGCAATTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCAATCTCCAAAGCAGGGAGCACGCTGTTGGAGCATTGTTGACAATGTGTGAAAGTGACCGGTGTAAATACAGGGAACCCATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACCGTTCAAGGAACGCCCAAGTCTCAGTTGAAAGCACGTAGCCTTTTGCGGTTGCTGAGAGAATCTCCTGATCCCAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTTTGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCGAAGGGCAATTGTCTGCACCCCAAGTGATCTGCCAATTGCTAGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1152 0.4696 MDSSSPSSSDGLSPDTNFEVDTPRTPVAVRRALQLLRSDDPDLKLQAARDIRRLTKTSHRCRRQLSDAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKISIVEAGALEPIIIFLKSHNINLQEYATASLLTLSASTTNKPVICASGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSTVLETNPIPFIVNLLKTCKKSSKTAEKCCALIESLVGFDEGRTALTSEEGAILAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARSLLRLLRESPDPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQRRAIVCTPSDLPIASCASEVSSK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1699 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 109 151 IPR000225 GO:0005515
Glsi10g1699 383 SUPERFAMILY ARM repeat 29 333 IPR016024 -
Glsi10g1699 383 SMART arm_5 98 138 IPR000225 GO:0005515
Glsi10g1699 383 SMART arm_5 139 179 IPR000225 GO:0005515
Glsi10g1699 383 SMART arm_5 55 96 IPR000225 GO:0005515
Glsi10g1699 383 SMART arm_5 180 222 IPR000225 GO:0005515
Glsi10g1699 383 SMART arm_5 223 264 IPR000225 GO:0005515
Glsi10g1699 383 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g1699 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 192 IPR000225 GO:0005515
Glsi10g1699 383 PANTHER U BOX DOMAIN-CONTAINING 27 310 - -
Glsi10g1699 383 Pfam Armadillo/beta-catenin-like repeat 142 178 IPR000225 GO:0005515
Glsi10g1699 383 Gene3D - 16 366 IPR011989 -
Glsi10g1699 383 FunFam U-box domain-containing protein 4 15 365 - -
Glsi10g1699 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 67 109 IPR000225 GO:0005515
Glsi10g1699 383 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1699 Glsi-ChrGlsi10 11486953 11490249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1699 29 306 U-box Gene Family AT2G23140 33.929 1.64e-39 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1699 10 11486953 11490249 Glsi10g1699 10 11486953 11490249 CCT
Glsi10g1699 10 11486953 11490249 Glsi10g1699 10 11486953 11490249 ECH