LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1693	ATGAGAAAGCCTTGCTGTGAGAAACAAGACACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGATTACATCGAAACTCATGGTGAAGTCTCTTGGCATTCCCTTCCCAAGGCTGCAGGGTTGCATCGTTGTGGGAAAAGTTGTAGGCTGAGATGGATAAACTACTTAAAACCAGACATCAATCGTGGAAACTTCGCCCAAGATGAAGAAGACCTCATCATCAAGCTCCATGCCCTTCTCGGCAACCGGTGGTCACTAATAGCAGGAAGGTTGCCAGGACGTACAGACAATGAGGTAAAGAACTATTGGAATTCTCACATCCGCAGAAAGCTGATAAAGATGGGAATTGATCCAAATAACCACAAGCTTCACCAAGGCTTTCCTCGTCCTCATGCACTCCCTGTTTCTTCTGGTGCAACATCATCATCCAGGTCCATGGACAAAGATCATAAAGTACCCCTTATCAAACCCTGGAGTGCAAATGACACGGCTAATAAATCGGACACAGATCAGAGTGGTCTTGAAGAAAAAAAGTTGGGTTCTTCATCCCATTTGAATCTTGACCTTACAATAGCCTTTTCTTCTCCAAGGTTTGCTCTTTTGAAAGACAGACCAAAACCAAATTCTGAGTCCACCGAGATAAAGGACATGGATAGCGAATCAGATCATCCTACCCTTCTTCTATTTAATTAG	705	0.4383	MRKPCCEKQDTNKGAWSKQEDQKLIDYIETHGEVSWHSLPKAAGLHRCGKSCRLRWINYLKPDINRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQGFPRPHALPVSSGATSSSRSMDKDHKVPLIKPWSANDTANKSDTDQSGLEEKKLGSSSHLNLDLTIAFSSPRFALLKDRPKPNSESTEIKDMDSESDHPTLLLFN	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1693	234	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Glsi10g1693	234	MobiDBLite	consensus disorder prediction	204	234	-	-
	Glsi10g1693	234	Gene3D	-	68	130	-	-
	Glsi10g1693	234	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	8	60	IPR017930	-
	Glsi10g1693	234	FunFam	Transcription repressor MYB4	68	134	-	-
	Glsi10g1693	234	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	181	-	-
	Glsi10g1693	234	CDD	SANT	68	111	IPR001005	-
	Glsi10g1693	234	Pfam	Myb-like DNA-binding domain	13	60	IPR001005	-
	Glsi10g1693	234	Pfam	Myb-like DNA-binding domain	66	110	IPR001005	-
	Glsi10g1693	234	CDD	SANT	15	60	IPR001005	-
	Glsi10g1693	234	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	61	115	IPR017930	-
	Glsi10g1693	234	SMART	sant	12	62	IPR001005	-
	Glsi10g1693	234	SMART	sant	65	113	IPR001005	-
	Glsi10g1693	234	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Glsi10g1693	234	Gene3D	-	5	65	-	-
	Glsi10g1693	234	MobiDBLite	consensus disorder prediction	207	226	-	-
	Glsi10g1693	234	ProSiteProfiles	Myb-like domain profile.	8	60	IPR001005	-
	Glsi10g1693	234	MobiDBLite	consensus disorder prediction	124	185	-	-
	Glsi10g1693	234	FunFam	MYB-related transcription factor	12	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1693	Glsi-ChrGlsi10	11441664	11443519	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1693	2	199	MYB Transcription Factor Family	AT4G09460	52.607	8.19e-73	219

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi10g1693		Myb_DNA-binding	5.6e-14	CL0123