Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1689 ATGGGTTGTTGTTTTAGTGCGAAGGTCAAAGCTGAAAGCTCTCCGCACCATGGTTTGAATTCAAACTATGGTAGCAAAGAAGAGGATGGTTTGAGTGGTTTAAGCAGCAAGGTTTCTCCACCCTCTGTGCCTCCAACTCCTCGGACTGAGGGTGAGATCTTGCAGTCCTCCAATATGAAGAGCTTCAGCTATAGTGAGCTAAGAACAGCTACAAGGAACTTTCGTCCAGATAGTGTCGTGGGTGAAGGTGGGTTTGGTAGTGTATTTAAGGGGTGGGTTGATGAGCTGTCACTTGCACCTGCTAAACCGGGGACTGGGATTGTCATTGCTGTGAAGAGGCTTAATCAAGAAAGCTTCCAGGGACACAGTGAATGGCTGACAGAAATCAACTGCCTGGGGCAGCTGCATCATCCTAATCTTGTGAAATTATTTGGCTACTGCTTAGAGGATGACCACCGGCTTTTGGTGTATGAGTTTTTGGCCAAAGGCAGTTTGGATAATCATTTATTCAGGAGGGCATCTCACGTTCAACCACTTTCTTGGAGCATCCGTATGAAGGTTGCCCTTGATGCTGCTAAGGGTCTTGCCTTTCTTCACAGTGACGAAGTAAAAGTGATATATCGAGACTTCAAAGCCGCTAATATCTTGCTTGATTCGAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAGGATGGACCAGCAGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTATGGTTATGCTGCTCCTGAGTATATGGCCACAGGTCATTTATCCAAAAAGAGTGACGTATACAGTTTTGGGGTGGTTCTCCTTGAAATTATGTCAGGCAAACGTGCATTGGACAAAAACAGGCCATCCAGGGAACATAATTTAATTGAATGGGCCAAGCCTTACCTTTCCAGCAAACGTCGAATTTTCCAAGTTATGGATGCTGGTATTGAAGGCCAATACACATTGCGTGAAGCAATGAAAGTAGCTGACCTTGCAATTCAATGCCTGTCTGTAGAACCCAGGTTTAGACCAAACATGGCCGAAGTGGTAAGAACATTGGAACTTCTTCAGGATTCCAATGACACAGGTGCAGTGGGGACCTCTGGAGATAGTCATAGGCATAGCTCAAGCAATAGGGGTCCTAAACGGCATAAAAGAAGTAGTCATGAAGCTTCAAATGGAGAAGGTACTTCAAATTCAAGATCAGCTGCTTCTCCACTTGTACATAAATGA 1242 0.4493 MGCCFSAKVKAESSPHHGLNSNYGSKEEDGLSGLSSKVSPPSVPPTPRTEGEILQSSNMKSFSYSELRTATRNFRPDSVVGEGGFGSVFKGWVDELSLAPAKPGTGIVIAVKRLNQESFQGHSEWLTEINCLGQLHHPNLVKLFGYCLEDDHRLLVYEFLAKGSLDNHLFRRASHVQPLSWSIRMKVALDAAKGLAFLHSDEVKVIYRDFKAANILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLSKKSDVYSFGVVLLEIMSGKRALDKNRPSREHNLIEWAKPYLSSKRRIFQVMDAGIEGQYTLREAMKVADLAIQCLSVEPRFRPNMAEVVRTLELLQDSNDTGAVGTSGDSHRHSSSNRGPKRHKRSSHEASNGEGTSNSRSAASPLVHK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1689 413 MobiDBLite consensus disorder prediction 363 377 - -
Glsi10g1689 413 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Glsi10g1689 413 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1689 413 MobiDBLite consensus disorder prediction 363 413 - -
Glsi10g1689 413 MobiDBLite consensus disorder prediction 15 29 - -
Glsi10g1689 413 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Glsi10g1689 413 PANTHER OS01G0588500 PROTEIN-RELATED 40 360 - -
Glsi10g1689 413 MobiDBLite consensus disorder prediction 395 413 - -
Glsi10g1689 413 SUPERFAMILY Protein kinase-like (PK-like) 46 358 IPR011009 -
Glsi10g1689 413 CDD STKc_IRAK 80 359 - -
Glsi10g1689 413 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Glsi10g1689 413 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Glsi10g1689 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Glsi10g1689 413 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Glsi10g1689 413 MobiDBLite consensus disorder prediction 1 55 - -
Glsi10g1689 413 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1689 Glsi-ChrGlsi10 11408740 11412851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1689 52 364 Glycoside Hydrolase AT3G07070 48.089 5.50e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi10g1689 PK_Tyr_Ser-Thr 4.1e-48 CL0016