Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1676 ATGTTCTCATACCAAATCAAATCAAAGCAATCGATGTATTTGATTGATGTAGTTTTGGACGGTTTCAGAAAACAAATTGGGATGAAACTGGAACCAACTGAGTTGTATAGAAGGAGATGTTTTATGATTGATAACACCAGATATGTGAGTTACCATGAAGATTTGGAGAGAGAAGGGTCTGAATTTCATGAGTCTTGTTGGAAGTTGTGGCAGCCAAACTTTTGCCAACCAAAATTTGGTCACCCTTTTAGAAGCATTTGGTGTGGCAGAGGTCAATTGGTAACGCTATGTTTAGACTACCTTGATGGAATGTGCATAGTGCTTGTTGTAGAGGTCAGACAAGCCCAAAAGAAATGGGACATCCTGTTTTGGTCCCTATTAATTGTAATTCCCCCCAAGTATGGACTCCCTAAAGAAATACGCTGTTCTCCTGCTATTCATGATTCTGAATTCTCACCAGATGTCGCCAAATTTTCTGTGCTTGGCGTATTTCTCATGGCTACAATGTTAAGAATGTATGCAACTTGTCAACAGCTTCAAGCTGAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTAGCCACACTGAAGTGCAGTTGAATATGCCACCATCAATGGCACTCACCACCAGAGGACATCTGCAAGGCCTCAGATTTCACCTCGCACTTCTTGATCGGGAGTTTGATGACCTAGATTATGAAAATTTAAGAGCTCTTGATTCAGATAATATTCCTACTGCACCATCTATGACTGAGGAGGAGATAAATGCTCTTCCTGTCCATAAGTATAGCGTATCAGGTCCCCAAAAAAATTTCTCAATGCAACAGACCTCATCCTCCGTGTCTGCTGAGAAGAAGCAAGATACCTCAACTGCAGTTGGGAGCATGAAAGCCTCCGATGATGAGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAATGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGCATTGATCCCTGGCTGCGGCAACAAGGGTCTTGCCCTGTCTGTAAATTCAGCGTAGGATCTGCATGGCATGAAAGTGGACAGAATGAAGTTGATGCTTCGGATATGGTCTGA 1107 0.4336 MFSYQIKSKQSMYLIDVVLDGFRKQIGMKLEPTELYRRRCFMIDNTRYVSYHEDLEREGSEFHESCWKLWQPNFCQPKFGHPFRSIWCGRGQLVTLCLDYLDGMCIVLVVEVRQAQKKWDILFWSLLIVIPPKYGLPKEIRCSPAIHDSEFSPDVAKFSVLGVFLMATMLRMYATCQQLQAEAQAHAAAASGLLSHTEVQLNMPPSMALTTRGHLQGLRFHLALLDREFDDLDYENLRALDSDNIPTAPSMTEEEINALPVHKYSVSGPQKNFSMQQTSSSVSAEKKQDTSTAVGSMKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGSCPVCKFSVGSAWHESGQNEVDASDMV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1676 368 Pfam Ring finger domain 305 347 IPR001841 -
Glsi10g1676 368 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Glsi10g1676 368 SUPERFAMILY RING/U-box 301 352 - -
Glsi10g1676 368 PANTHER TARGET OF ERK KINASE MPK-1 152 352 - -
Glsi10g1676 368 MobiDBLite consensus disorder prediction 270 296 - -
Glsi10g1676 368 CDD RING-H2_PA-TM-RING 305 347 - -
Glsi10g1676 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 352 IPR013083 -
Glsi10g1676 368 SMART ring_2 306 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1676 Glsi-ChrGlsi10 11291895 11298568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1676 146 368 C3H Transcription Factor Family AT3G55530 66.518 4.06e-91 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1676 10 11291895 11298568 Glsi10g1676 10 11291895 11298568 ECH