Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g1675 | ATGTCTTCGGGGACATCTTCTTATTGGTGTTACAGATGCAGTCGCTTCGTGAGGGTGCGGAGGCAGGACATGGTGGTTTGTCCGGACTGCGACAGTGGATTCGTGGAAGAGGTTGAATATACGCCCCGGCCAGTACACACCGATCCGCGGCCGAGGAATTTCCCTGCGACGGCGATGTACATGATCGGCCACAGCCCCAATTCCGATCAGAGTTCTCGTCCTGCTTTCCGGAGGACCCGCAGGAACGCTGGTGGTCCTTCTCCGTTCAATCCGGTCATCGTGCTCCTTGGATCCTCTAACGGGGCTGGTCAGAGCAGGGGAGAGGGACGTGGGTTTGAGCTTTATTACGATGATGGTGGCGGTTCTGGGCTCAGGCCTTTGCCTCCGAACGTATCGGAGACTCTTCTGGGATCCGGATTTGATAGGCTCTTGGAACAACTTTCCCAGATTGAAATGAACAGTGTTTCGCGATACGAGCATCCTCCGGCATCAAAAGCTGCGATTGATGCATTGCCCACGATCGAGATTCATCAGTCTCATTTGTCCATGGAATCACACTGTGCTGTTTGCATGGAGCCTTTCGAATTGGGCACTGTGGCTCGGGAAATGCCTTGTAAGCACATATACCATCCGGACTGCATTCTGCCATGGCTTGCTCTTCACAATTCTTGCCCAGTTTGTCGCCATGAATTACCGGCTGATGCACAGAACATGCCTGTGACTGGGCATTCCCTTACTTGGAACGACGAAGAGAATATGGGATTGACAATCTGGAGGCTACCTGGTGGTGGGTTTGCGGTGGGCAGGTTTTCTGGGGGAAGAAGAGGTGCTGAGCTTGAGCTTCCCGGTGTTTCCACAGAGATGGATGGTGGGTTTAGCAATGTTGGCGAACCAAGGAGGGTTTCTTGGTCAACTAGAGAAAACAGAGGGAGGGAAAGTGGTGGGTTACGCAGAATGTTCCGTAATTTGTTTGGTTGCTTTCGGGGTGGAGTTCGACCTCAAGGTCCTCAACCTTCTACTTCTTTTACAGAATCTAGACCTATAAGGAGAAGTGCATCTCGTCCTAACATGAATTATTCACAACGTTCACGGAGGACATGGTCAATGGAGGGAAACAGCGGAATGAGAAATTGGTAA | 1137 | 0.5163 | MSSGTSSYWCYRCSRFVRVRRQDMVVCPDCDSGFVEEVEYTPRPVHTDPRPRNFPATAMYMIGHSPNSDQSSRPAFRRTRRNAGGPSPFNPVIVLLGSSNGAGQSRGEGRGFELYYDDGGGSGLRPLPPNVSETLLGSGFDRLLEQLSQIEMNSVSRYEHPPASKAAIDALPTIEIHQSHLSMESHCAVCMEPFELGTVAREMPCKHIYHPDCILPWLALHNSCPVCRHELPADAQNMPVTGHSLTWNDEENMGLTIWRLPGGGFAVGRFSGGRRGAELELPGVSTEMDGGFSNVGEPRRVSWSTRENRGRESGGLRRMFRNLFGCFRGGVRPQGPQPSTSFTESRPIRRSASRPNMNYSQRSRRTWSMEGNSGMRNW | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g1675 | 378 | MobiDBLite | consensus disorder prediction | 289 | 312 | - | - | |
| Glsi10g1675 | 378 | SUPERFAMILY | RING/U-box | 167 | 240 | - | - | |
| Glsi10g1675 | 378 | CDD | RING-H2_RNF126-like | 187 | 228 | - | - | |
| Glsi10g1675 | 378 | MobiDBLite | consensus disorder prediction | 329 | 378 | - | - | |
| Glsi10g1675 | 378 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 87 | 232 | - | - | |
| Glsi10g1675 | 378 | MobiDBLite | consensus disorder prediction | 64 | 89 | - | - | |
| Glsi10g1675 | 378 | SMART | ring_2 | 187 | 227 | IPR001841 | - | |
| Glsi10g1675 | 378 | MobiDBLite | consensus disorder prediction | 334 | 378 | - | - | |
| Glsi10g1675 | 378 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 228 | IPR001841 | - | |
| Glsi10g1675 | 378 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 234 | IPR013083 | - | |
| Glsi10g1675 | 378 | Pfam | Ring finger domain | 186 | 228 | IPR001841 | - | |
| Glsi10g1675 | 378 | Pfam | zinc-ribbon | 7 | 37 | IPR039525 | GO:0061630 | |
| Glsi10g1675 | 378 | FunFam | E3 ubiquitin-protein ligase RING1-like | 149 | 234 | - | - | |
| Glsi10g1675 | 378 | Pfam | Protein of unknown function (DUF1117) | 253 | 356 | IPR010543 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g1675 | Glsi-ChrGlsi10 | 11290238 | 11291374 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g1675 | 126 | 237 | C3H Transcription Factor Family | AT5G01980 | 42.857 | 9.14e-24 | 100 |