Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1655 ATGGCTTCAAACTCCATCAGCAAAGAAAATTCCTCATCCTCTTGGACAGCCGAGCAGAACAAGCAATTTGAGAAGGCACTTGCAATATTTGCGGAAGACGCACCAAAGCGCTGGCAAAAGATAGCTGAAATAGTTGGTGATAAATCAGTTGAAGAAGTGAAGAGGCATTATGAAATCCTCTTAGAAGATGTTATGAATATAGAGTCTGGGCTTGTTCCTATTCCTAATTACTCTGCTTTGACTGGTGCTGAGAAAGAAACTAGGGAGGAGCACAAATTAATGGATGTGAAATCTGAAAGCAGAAGCATGCAAGAAGATGACGGTTTGGGCTGGGGAAAATCTTTACCAGTGCCAAGTGTGCAAGAGATGGTGAGGAATGACTCTCAGACTGTTCCTGAGAGATACATAAGAGACTCCAAAGACAGACCAGTCATTGATGGGTTGTGTCCAACTTCATCTGAAATTCCAGTGATAGATTTCTCCTTGCTGGCAAACAGAGATAAAGATGAACAAAAGAAGCTGGATTTTGCTTGCAAGGAGTGGGGTTTCTTCCAGATAATAAATCATGGAGTGGGAGAAGACTTGCTACAAAGAATGAAAGCTGCAGGAGCAAGATTTTTTGATCTCCCAATGGAGGAGAAAAATAAATATTCGATGGCAGAGAGTGACATCCAGGGATATGGGCATGTCTTTGTAATCTCAGAAAATCAGAAGTTGGATTGGGGTGACCTGATGTTTTTAATCTCGTACCCACCTGAGTATAGGAATCTCAAGTATTGGCCACTTACAGTACCAGGTTTCAAGGATACAATGGAAGAGTACACAACACAAATAAACGAAATTTCTGAGGAGATAGTTGCCAATTTATCTCTGTTGATGGGAATGGAAGAAGATGATCTAAAAGAGTTGCACAAAGAAATAAAACTATCAATGCGTATGAACTATTATCCGCCTTGCCCAAAGCCTGACCTTGTTCTGGGTATTAGTCCACATTCTGATGGCGGCACCATAACCATACTTCTGCAAGACGATGATATCACTGCCCTACAAGTTAAGCACCAAGCAGCATGGGTTCCTGTCAAACCACTGCCTGGTGCATTTGTTGTTAACGTTGGTGACGCTCTTGAGGTGTGGAGTAATGGAACGTACAAGAGTGTTGAACACAGAGCTGTAACAAATGCAACCAAAGCAAGAATGTCGATTGCTACGTTTGTGGCTCCACATGAAGGAGCAGAAATGGGGCCAGTGGAACCAATGCTGCGTGATCAGCCTGCCATGTACAGAAAGATAAAGTGCATCGAATATGTTAGGCATTATGTGGGCAGGAAGCTGGAAGGAAAAGCCCTTGACATTGTTAAAATACAAGGCGACTAA 1374 0.4258 MASNSISKENSSSSWTAEQNKQFEKALAIFAEDAPKRWQKIAEIVGDKSVEEVKRHYEILLEDVMNIESGLVPIPNYSALTGAEKETREEHKLMDVKSESRSMQEDDGLGWGKSLPVPSVQEMVRNDSQTVPERYIRDSKDRPVIDGLCPTSSEIPVIDFSLLANRDKDEQKKLDFACKEWGFFQIINHGVGEDLLQRMKAAGARFFDLPMEEKNKYSMAESDIQGYGHVFVISENQKLDWGDLMFLISYPPEYRNLKYWPLTVPGFKDTMEEYTTQINEISEEIVANLSLLMGMEEDDLKELHKEIKLSMRMNYYPPCPKPDLVLGISPHSDGGTITILLQDDDITALQVKHQAAWVPVKPLPGAFVVNVGDALEVWSNGTYKSVEHRAVTNATKARMSIATFVAPHEGAEMGPVEPMLRDQPAMYRKIKCIEYVRHYVGRKLEGKALDIVKIQGD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1655 457 FunFam Protein SRG1 115 447 - -
Glsi10g1655 457 MobiDBLite consensus disorder prediction 88 106 - -
Glsi10g1655 457 Pfam 2OG-Fe(II) oxygenase superfamily 311 406 IPR044861 -
Glsi10g1655 457 Gene3D - 115 445 IPR027443 -
Glsi10g1655 457 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 307 407 IPR005123 -
Glsi10g1655 457 SMART sant 11 63 IPR001005 -
Glsi10g1655 457 SUPERFAMILY Clavaminate synthase-like 116 446 - -
Glsi10g1655 457 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 151 430 - -
Glsi10g1655 457 FunFam Transcription factor SRM1 7 74 - -
Glsi10g1655 457 MobiDBLite consensus disorder prediction 88 112 - -
Glsi10g1655 457 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Glsi10g1655 457 Gene3D - 6 74 - -
Glsi10g1655 457 CDD SANT 15 61 IPR001005 -
Glsi10g1655 457 ProSiteProfiles SANT domain profile. 10 65 IPR017884 -
Glsi10g1655 457 SUPERFAMILY Homeodomain-like 13 69 IPR009057 -
Glsi10g1655 457 Pfam non-haem dioxygenase in morphine synthesis N-terminal 155 258 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1655 Glsi-ChrGlsi10 11156235 11162070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1655 154 448 Glycosyltransferase AT5G59530 36.246 6.72e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi10g1655 DIOX_N 9.2e-27 CL0029