Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1646 ATGTCCACGCAAGGGCGGGGAGGGATTGACCATGCCGTGCTGGATGATATAATCAGACGACTAACGGAAGTCCGATTAGCCGGACCAGGAAAGCAGGTTCAGCTCTCTGAGACCGAGATCAAGCAGCTCTGTGTTGTTTCCAGGGACATATTTCTTCAGCAGCCCATTTTGCTCGAACTCGAAGCCCCCATCAAGATTTGCGGTGACATTCATGGGCAGTACAGTGACTTGTTAAGGCTCTTTGAGTATGGGGGATTTCCTCCTAGTGCCAATTATCTATTCTTAGGAGATTATGTGGATCGTGGAAAGCAGAGCTTAGAGACCATTTGCCTTTTGCTTGCCTATAAAATTAAATACCCAGAAAACTTTTTCCTTTTGAGGGGAAATCATGAATGTGCCTCCATTAATAAGATATATGGATTTTATGATGAATGTAAGCGGCGGTTTAAAGTGAGGCTCTGGAAAGCCTTCACTGAATGTTTTAACTGCCTTCCTGTGGCAGCTCTTGTAGATGACAAAATACTGTGCATGCATGGTGGTCTTTCGCCTGACCTATTAAACTTGGATCAAATTAGAAGTCTACCTCGTCCAACTGCTATTCCAGACACTGGCTTGCTTTGTGATTTGCTTTGGTCAGATCCTGCTAGAGATGTAAAGGGATGGGGTATGAATGATAGAGGAGTCTCTTACACATTTGGCCCTGATAAGGTTGCTGAATTTTTGACAAAGCATGACTTGGACCTTATCTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTTGCCAACAGGCAACTTGTGACAATATTTTCTGCTCCAAACTACTGTGGTGAATTTGATAATGCTGGTTCCATGATGAGTGTGGATGAGAACTTGATGTGCTCTTTCCAGATTCTTAAGCCTGCAGAGAAAAAAGCAAAGTTTATGTTGTCAAACAAAATGTGA 951 0.4332 MSTQGRGGIDHAVLDDIIRRLTEVRLAGPGKQVQLSETEIKQLCVVSRDIFLQQPILLELEAPIKICGDIHGQYSDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINKIYGFYDECKRRFKVRLWKAFTECFNCLPVAALVDDKILCMHGGLSPDLLNLDQIRSLPRPTAIPDTGLLCDLLWSDPARDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGSMMSVDENLMCSFQILKPAEKKAKFMLSNKM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1646 316 SUPERFAMILY Metallo-dependent phosphatases 29 308 IPR029052 -
Glsi10g1646 316 FunFam Serine/threonine-protein phosphatase 61 314 - -
Glsi10g1646 316 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 17 308 - -
Glsi10g1646 316 SMART pp2a_7 35 305 IPR006186 GO:0016787
Glsi10g1646 316 ProSitePatterns Serine/threonine specific protein phosphatases signature. 126 131 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 245 265 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 267 283 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 188 215 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 92 119 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 159 185 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 63 90 IPR006186 GO:0016787
Glsi10g1646 316 PRINTS Serine/threonine phosphatase family signature 125 149 IPR006186 GO:0016787
Glsi10g1646 316 Pfam Calcineurin-like phosphoesterase 63 255 IPR004843 GO:0016787
Glsi10g1646 316 CDD MPP_PP1_PPKL 13 303 - -
Glsi10g1646 316 Gene3D - 8 314 IPR029052 -
Glsi10g1646 316 Pfam Serine-threonine protein phosphatase N-terminal domain 14 61 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1646 Glsi-ChrGlsi10 11097446 11099573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1646 64 251 Calmodulin-binding Proteins AT5G63870 31.839 7.21e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1646 10 11097446 11099573 Glsi10g1646 10 11097446 11099573 ECH