Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1645 ATGGAAGAAATAGTTGACCTTGCTTGTAAAGAGAAACCGTGGCGTACATGGGTTTCCGTCGTTATGGCTCCTCCTGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGACTTTGCTTCCTCATACTCAGAGAGGAAGTCTGGCTTTATGAAATGGTTTAGTAAGCTTTTCAAAAGTGGGTCCAGTCGAGGAAGGGGAGGTCGACATCTCCAGCAGCCTGCGGAGGAAAATATGGCTTGGCGAAATCCAGCTAGATCGTTGGATGACCGTTCTAGAGCACAGAAGGAGAAAGAGGATCTGAACCAAGCGATTGCACTTTCTTTATCTGAAGATTTGAAGAGACCAAATGCTCGTCAAGGATATAGATGGCGGACAGACACTAATGAAGATTATGCAAAGGAACTTCAGGATAGTCTGAACTCATCTGCACATCCTCCATATAACCCTACACCATTTTATCCTGGGGCACGTAGAATATGTAGTGGGTGCAAGCAGGAAATAGTCTATGGCAATTCTTTGGGATGCATGAATACTTATTTCCATCCAGATTGCTTTCGCTGCCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAGGCATCCATATCATAAGTCCTGCTTCAAAGAGTTGAACCATCCGAAATGTGAAGTTTGCCACCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCATCCATTTTGGTCCCAAAAATATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCCTGGAATGCAAGATACTATAGTTTGGAAGATGGACGGAGTTTATGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGTCAACCCCTTTACCATGCTATCAGAGATTATTATGAAGGAATGAATATGAGAATAGATCAACAAATTCCTATGCTTCTGGTTGAGAGACAAGCACTCAATGAAGCTATTGTCGGGGAGAAGAATGGTTTCCATCACTTGCCAGAGACAAGGGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGGCCAAGAATTGGGGGCCACCGACTAATTGGGATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTATGGCCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCACGAGTTGATGCATGGCTGGTTACGCCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGTATCTGTCAGATTCTATCATATATGTGGCTTGAGTCAGAAGTGATGCCAAGCTTCAAAAGCATGCCATCAACTTCCGCAGCTTCTTCCTCCTCCTCCTCATCAAAGAAAGGTGCCAAGTCTGGAGTTGAAAATAAACTGGGTGAATTTTTCATGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGGGGTGGTTTTAGAGCTGCTAATGAAGCTGTGAACAAATATGGTTTACGTTGTACCCTCGAGCATATTCGTTTGACCGGTAGTTTCCCAGTGTAA 1569 0.4347 MEEIVDLACKEKPWRTWVSVVMAPPEVNHLSHPCIYGDFASSYSERKSGFMKWFSKLFKSGSSRGRGGRHLQQPAEENMAWRNPARSLDDRSRAQKEKEDLNQAIALSLSEDLKRPNARQGYRWRTDTNEDYAKELQDSLNSSAHPPYNPTPFYPGARRICSGCKQEIVYGNSLGCMNTYFHPDCFRCHSCRYPITEREFSLSGRHPYHKSCFKELNHPKCEVCHQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLESWNARYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMRIDQQIPMLLVERQALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQILSYMWLESEVMPSFKSMPSTSAASSSSSSSKKGAKSGVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGSFPV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1645 522 Pfam LIM domain 161 214 IPR001781 -
Glsi10g1645 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 186 - -
Glsi10g1645 522 PANTHER PROTEIN DA1-RELATED 2 53 521 IPR045218 -
Glsi10g1645 522 Gene3D Cysteine Rich Protein 155 220 - -
Glsi10g1645 522 Pfam Protein DA1 310 517 IPR022087 -
Glsi10g1645 522 SMART lim_4 160 212 IPR001781 -
Glsi10g1645 522 CDD LIM_DA1 161 213 - -
Glsi10g1645 522 MobiDBLite consensus disorder prediction 61 99 - -
Glsi10g1645 522 FunFam Protein DA1-related 2 150 214 - -
Glsi10g1645 522 ProSiteProfiles LIM domain profile. 159 219 IPR001781 -
Glsi10g1645 522 Coils Coil 91 111 - -
Glsi10g1645 522 MobiDBLite consensus disorder prediction 83 99 - -
Glsi10g1645 522 ProSitePatterns LIM zinc-binding domain signature. 161 195 IPR001781 -
Glsi10g1645 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1645 Glsi-ChrGlsi10 11082829 11088503 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi10g1645 DA1-like 9e-99 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1645 10 11082829 11088503 Glsi10g1645 10 11082829 11088503 CCT
Glsi10g1645 10 11082829 11088503 Glsi10g1645 10 11082829 11088503 ECH