Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1628 ATGGTGATCACAGAGAAGTCTAACGTTGTTGATATAGACAATGGTTGTCGACGGAGCTGCGCCGGCGGTGGCGGCGATGAAGGGTATTCAGACACCAGCGACAGGTCAGATGAGGAGCAAAGGTCCTCCCACGAGTCTAGTCTGGAGATTGTGGGAGTATCGGATAAAGAGAGGGGATCCTCTGCATCCGAGTGTTCGGTGGAGGTGGATCTGGACAGTGTGGTGCCTGAGGTGAAGGTACATTTGGGTAAGGTGGAGAGGGATTGTAGGATTTGTCATCTAAGCATGGATATGACCAATCATGAATCTGGGACTCCCATTGAGCTGGGATGTTCCTGCAAAGACGATTTGGCTGCTGCCCACAAACAGTGTGCCGAGTCTTGGTTCAAGATCAAGGGTAACAAAACCTGTGAAATCTGTGGATCACTGGCACGCAACGTAGCTGGGGCTGTCGAAGTTGAAATGACAGAGCAGTGGAATGAGGCGAACGATGCCACCATGGTACCCCTAAGTGGAGCTGTGGCCCATGCAGAGAATCGAAATTTCTGGCAGGGCCACCGGTTCTTGAATTTCCTGCTAGCTTGTATGGTATTTGCCTTTGTCATATCTTGGCTTTTTCACTTCAATGTGCCCTCATGA 639 0.5055 MVITEKSNVVDIDNGCRRSCAGGGGDEGYSDTSDRSDEEQRSSHESSLEIVGVSDKERGSSASECSVEVDLDSVVPEVKVHLGKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAESWFKIKGNKTCEICGSLARNVAGAVEVEMTEQWNEANDATMVPLSGAVAHAENRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1628 212 SMART ringv_2 88 141 IPR011016 GO:0008270
Glsi10g1628 212 MobiDBLite consensus disorder prediction 13 59 - -
Glsi10g1628 212 Pfam RING-variant domain 89 140 IPR011016 GO:0008270
Glsi10g1628 212 ProSiteProfiles Zinc finger RING-CH-type profile. 81 147 IPR011016 GO:0008270
Glsi10g1628 212 MobiDBLite consensus disorder prediction 30 45 - -
Glsi10g1628 212 SUPERFAMILY RING/U-box 86 143 - -
Glsi10g1628 212 PANTHER ZINC FINGER, RING-CH-TYPE 13 211 - -
Glsi10g1628 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1628 Glsi-ChrGlsi10 10934197 10936333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1628 34 212 C3H Transcription Factor Family AT5G05830 65.000 1.38e-77 230