Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1627 ATGACCGAGGAAGACCTTACTGGGTTACCCTCCGCTCAACCCACCAGCAATGGCTTCGCTGATGGCACTGAGCTGGAACCTGCAGGCGATAGTGTTGAGTTGTCGGCGCTTGGAGACGGTAACGCTGCCGGCAGAGTGAAGGGACCAGAGGAGGACGTGGCTCTCAGTCGATTGGTGAGCAAGTTCGAGGCGACGAAATGGAGCATGATTGCCGCAGGTAACAATGTTGAGCTGTCGGCGCATGGAGACGGTAACACTGCTGGTAGAGTGAAGGGACCTTGGTCCCCAGAGGAAGACGTGGTTCTCAGTCGATTGGTGAGCAAGTTTGGGGCGAGGAATTGGAGCATGATTGCCCGTGGAATACCTGGGCGTTCAGGCAAGTCCTGCCGTCTCCGGTGGTGTAATCAGCTCGACCCCTGTGTCAGACGCAAGCCCTTTACTGGTAAACTCCATTGCCCCGCAGAACATGGTGACCTAGAATGTCTACACAATGAATTGAAGAACTTAGGTGGGATGATGGTTAAGTTTATCTTAGACAATGGTTACCATACTTCATGTGCATTAAGTGTTAAAGTATTTGTGACAAATATCTTATGCCTTTCAAAGTCTCATGAAAAGAAAATTGCTGCAGAGGAAGAGGATCGTGTTATAATTGCAGCCCATGCAATCCACGGAAACAAATGGGCAGCAATTGCAAGGCTTCTTCCGGGTAGAACAGATAATGCAATCAAGAACCACTGGAATTCTACACTAAAGCGCAGGTTTATGGGACTGGGAAGATATGTTCCAGCACCTGCCGATGTGATGGGAGAAGGCAGCCTTGAGAAAACAAAGGCTTCCTCTGAAGAAACCATGTCAGTTGGGGATGCCAATCCACTGAATCATACAGAAGATAGAAATATCATGATTGGTGATGGAATTAAGCAGTATAAAGACAATCCTGAAAGAAAAGATGGTGTTGAAGTGGTGGAACATCCTACCCTGTGTCGACCAGTAGCACGTCCTAGTGCATTTAGTGCTTATAATCCTCCAAGCAGGCCAACAATTGGGTCTACGTATTCAAAGATGCTCCCAATGCAGGGCCCTCTGGTTCAGCTATCCAAAGCAGAAATAGGAGCCTTAAAGCTAATTGATGATGTTAGCTGTGAGCCTATAGTTCCATCGCAATGTGGTCATGGCTGCTCTGCAGCTGATTCAAAGGGAAGCCATTCTCATGATTCACTATTAGGTCCTGAGTTTGTTGACTATTTGGAATTCCCGTCTTTATTATGTCATGAAATGATTCCTATAGCTACAGATTTAAATAATATTGCTTGGATCAAGAGTGGCCTTGAGAGTCGTGGTGCCAGAATACCCGAGAATGCTGCAAAGTTAACTGGACCCCGAGGTGTTGGCATGACCTCACAAACAGGCTTTCTACAAAAAGGTCTGAATCATGACTACGTCCACCTTGGGAGGGACCTAGCAAGTTTCAGGGTGTAA 1482 0.4723 MTEEDLTGLPSAQPTSNGFADGTELEPAGDSVELSALGDGNAAGRVKGPEEDVALSRLVSKFEATKWSMIAAGNNVELSAHGDGNTAGRVKGPWSPEEDVVLSRLVSKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPCVRRKPFTGKLHCPAEHGDLECLHNELKNLGGMMVKFILDNGYHTSCALSVKVFVTNILCLSKSHEKKIAAEEEDRVIIAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRFMGLGRYVPAPADVMGEGSLEKTKASSEETMSVGDANPLNHTEDRNIMIGDGIKQYKDNPERKDGVEVVEHPTLCRPVARPSAFSAYNPPSRPTIGSTYSKMLPMQGPLVQLSKAEIGALKLIDDVSCEPIVPSQCGHGCSAADSKGSHSHDSLLGPEFVDYLEFPSLLCHEMIPIATDLNNIAWIKSGLESRGARIPENAAKLTGPRGVGMTSQTGFLQKGLNHDYVHLGRDLASFRV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1627 493 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g1627 493 PANTHER MYB PROTEIN-RELATED 91 282 - -
Glsi10g1627 493 CDD SANT 93 135 IPR001005 -
Glsi10g1627 493 Gene3D - 210 254 - -
Glsi10g1627 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 255 IPR017930 -
Glsi10g1627 493 CDD SANT 211 251 IPR001005 -
Glsi10g1627 493 Gene3D - 90 142 - -
Glsi10g1627 493 ProSiteProfiles Myb-like domain profile. 201 251 IPR001005 -
Glsi10g1627 493 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Glsi10g1627 493 Pfam Myb-like DNA-binding domain 211 250 IPR001005 -
Glsi10g1627 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Glsi10g1627 493 MobiDBLite consensus disorder prediction 1 48 - -
Glsi10g1627 493 SUPERFAMILY Homeodomain-like 88 247 IPR009057 -
Glsi10g1627 493 FunFam MYB transcription factor 91 142 - -
Glsi10g1627 493 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Glsi10g1627 493 MobiDBLite consensus disorder prediction 277 297 - -
Glsi10g1627 493 SMART sant 205 253 IPR001005 -
Glsi10g1627 493 SMART sant 90 139 IPR001005 -
Glsi10g1627 493 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1627 Glsi-ChrGlsi10 10928171 10932270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1627 205 458 MYB Transcription Factor Family AT3G55730 42.435 1.93e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1627 Myb_DNA-binding 1.5e-13 CL0123