Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1618 ATGGAAACTTTGTACCCATCTTCTTTTATGTCAAGTTCAGATTGGTTTGTGGAAGAGAGCCTGAACACAGAATGGACTAAAGAAGAGAATAAGAGGTTTGAAAGTGCCCTTGCCATATATGACAAGGACACCCCAGATAGATGGCTGAAGGTGGCTGCCATGATCCCAGGGAAGACTGTATATGATGTGATCAAGCAGTACAGGGAATTGGAAGAAGATATCGGCGAAATAGAAGCAGGGCGTGTCCCGATTCCAGGATATCTTGCCTCTTCTTTCACGTTTGAATTGGTTGATAATCAGAACTATGATGCATACAGAAAGAGGCCCGTGGCTTTCAGGGCTTCTGATCAGGAGAGGAAGAAAGGGGTCCCCTGGACAGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTTAAGTATGGTAAAGGGGACTGGAGAAATATCTCTCGGAATTTTGTAATCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAGAAGTACTACATAAGGCAGAAGCTTCCTGGAGGGAATAATAACAAAAGGAGACCAAGCATTCACGACATAACCATTGTTAATCTTACAGAATCTACCAGTTCAGATGATAACAAGCCCCTTCTATTCAACGAGTCTCCTATGCTCTCACCACATCAGAAGTCCACTTGCACACCAAAAGTACAACCTAACCGGAATCAGCATGGCGATGGGTCACTTACGGTTTTCAACCCAAATTGTGACAATTTCTTCCTGTCATCTTCATCTGATATAGCTTCAAAGGCCCTAAAACTCCAAGGGCAGGATATTTATGACTGCGCTTTTCATGAGGCTTATACCAACTTCAAAAGCCAGGGTTTCAGGGCTGCTCCTAGAGACTTCGATAAGGCAGCTGTTTTAGGAATTCATGCATTGTAA 912 0.4408 METLYPSSFMSSSDWFVEESLNTEWTKEENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLASSFTFELVDNQNYDAYRKRPVAFRASDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVITKTPTQVASHAQKYYIRQKLPGGNNNKRRPSIHDITIVNLTESTSSDDNKPLLFNESPMLSPHQKSTCTPKVQPNRNQHGDGSLTVFNPNCDNFFLSSSSDIASKALKLQGQDIYDCAFHEAYTNFKSQGFRAAPRDFDKAAVLGIHAL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1618 303 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Glsi10g1618 303 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
Glsi10g1618 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 234 IPR043363 -
Glsi10g1618 303 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Glsi10g1618 303 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Glsi10g1618 303 FunFam transcription factor MYB1R1 123 174 - -
Glsi10g1618 303 CDD SANT 124 168 IPR001005 -
Glsi10g1618 303 Gene3D - 18 84 - -
Glsi10g1618 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Glsi10g1618 303 SMART sant 21 73 IPR001005 -
Glsi10g1618 303 SMART sant 121 171 IPR001005 -
Glsi10g1618 303 ProSiteProfiles SANT domain profile. 20 75 IPR017884 -
Glsi10g1618 303 SUPERFAMILY Homeodomain-like 23 74 IPR009057 -
Glsi10g1618 303 CDD SANT 24 70 IPR001005 -
Glsi10g1618 303 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Glsi10g1618 303 Gene3D - 123 174 - -
Glsi10g1618 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Glsi10g1618 303 FunFam Transcription factor SRM1 17 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1618 Glsi-ChrGlsi10 10875655 10876996 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1618 Myb_DNA-binding 1.3e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1618 10 10875655 10876996 Glsi10g1618 10 10875655 10876996 CCT
Glsi10g1618 10 10875655 10876996 Glsi10g1618 10 10875655 10876996 ECH
Glsi08g0709 08 5524891 5525979 Glsi10g1618 10 10875655 10876996 ECH
Glsi10g1618 10 10875655 10876996 Glsi08g0709 08 5524891 5525979 ECH