Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1610 ATGGAGGAGGGCATGTCAGGGTTTTGCATTAGAACTGCAAATCTTGGTGGTAATAATGGCAATAGTGGGAGTAGTGGTACTAAGTGTGGGCGTTGGAATCCCACAACTGAGCAGGTTAAGCTTCTGACTGACTTGTTCAGGTCTGGTCTCCGAACCCCAAGTACTGATCAGATTCAAAAGATCTCCACTCAGCTGAGCTTTTATGGCAAGATTGAGAGCAAGAATGTGTTCTACTGGTTTCAGAACCATAAAGCTAGGGAAAGACAGAAGCGTCGCAAAGTTTCCTTTCTTGATCAAAAGGATGTGATTCCTAAACACAACTCTGTCATCTCTTCCACACACAATCTAGCAGAGATGAATAAAGTTTCAGAGCCAGAGAGAGTGATGGAGACTCTTCAACTCTTCCCCTTGAACTCCATTGGTGAATCGGAATCAGAGAAGGTAAGGGTGGAAGCAAACGAATGCAGGGATAATACGATGTTTTCATGCGCAATGGGGGAACAAATGGAACACCCACCATTGGATTTGCGCCTGAGCTATCTGTAA 546 0.4469 MEEGMSGFCIRTANLGGNNGNSGSSGTKCGRWNPTTEQVKLLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFLDQKDVIPKHNSVISSTHNLAEMNKVSEPERVMETLQLFPLNSIGESESEKVRVEANECRDNTMFSCAMGEQMEHPPLDLRLSYL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1610 181 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Glsi10g1610 181 CDD homeodomain 31 91 IPR001356 GO:0003677
Glsi10g1610 181 Gene3D - 28 97 - -
Glsi10g1610 181 SUPERFAMILY Homeodomain-like 30 93 IPR009057 -
Glsi10g1610 181 FunFam WUSCHEL-related homeobox 11 28 96 - -
Glsi10g1610 181 SMART HOX_1 27 94 IPR001356 GO:0003677
Glsi10g1610 181 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Glsi10g1610 181 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 106 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1610 Glsi-ChrGlsi10 10820668 10821398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1610 8 181 Wox Gene Family AT3G11260 56.383 9.72e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi10g1610 Homeodomain 9.9e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1610 10 10820668 10821398 Glsi10g1610 10 10820668 10821398 CCT
Glsi10g1610 10 10820668 10821398 Glsi10g1610 10 10820668 10821398 ECH