LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1608	ATGGAGGCGAAGGAGCAAGATGTTTCGTTGGGAGCTAACAAGTTCCCGGAGAGGCAACCGATTGGGACGGCGGCTCAGAGCCAAGACGATGGCAAGGACTACCAGGAGCCACCACCGGCGCCGCTGTTTGAACCCTCTGAGCTTACATCATGGTCCTTCTACAGAGCTGGAATAGCCGAGTTCGTCGCCACTTTTCTGTTCCTCTACATCACCATCTTGACCGTTATGGGCGTCAACAGGTCCGATTCCAAGTGCAAAAGCGTTGGAATTCAAGGGATCGCTTGGGCTTTTGGTGGCATGATCTTCGCCCTCGTCTACTGCACAGCCGGCATCTCAGGGGGTCACATAAACCCAGCGGTGACTTTCGGATTGTTTTTGGCGAGGAAATTGTCGTTAACAAGGGCACTGTTCTACATGGTGATGCAGTGCCTGGGTGCGATCTGTGGTGCGGGTGTGGTGAAGGGGTTCGAGGGCAAAGCTAGATATGGGCTATACAAGGGTGGTGCCAATTTTGTGAACTTGGGTTACACCAAAGGGGACGGGCTCGGTGCAGAGATTGTTGGTACCTTTATTCTTGTCTACACCGTTTTCTCAGCCACCGATGCCAAGCGTAGCGCCAGAGACTCCCACGTCCCTATTCTGGCACCCTTGCCAATTGGGTTCGCTGTGTTCTTAGTCCACTTAGCCACCATCCCCATCACTGGAACCGGTATTAACCCAGCTCGCAGTCTCGGTGCGGCCATCATCTTCAACAAAGACCTTGGCTGGGATGAGCACTGGATTTTCTGGGTGGGACCGTTCATTGGAGCAGCACTGGCAGCACTGTACCACCAAGTCGTAATCAGAGCCATTCCTTTCAAGTCCAAGTGA	870	0.5356	MEAKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCKSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKARYGLYKGGANFVNLGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDEHWIFWVGPFIGAALAALYHQVVIRAIPFKSK	289

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1608	289	Gene3D	Glycerol uptake facilitator protein.	40	288	IPR023271	-
	Glsi10g1608	289	NCBIfam	MIP family channel protein	59	277	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	FunFam	Probable aquaporin PIP1-2	40	289	-	-
	Glsi10g1608	289	CDD	MIP	55	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	97	121	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	220	242	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	55	74	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	134	153	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	260	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Glsi10g1608	289	PRINTS	Major intrinsic protein family signature	184	202	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1608	Glsi-ChrGlsi10	10797887	10799191	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1608	1	289	Major Intrinsic Protein MIP	AT4G23400	85.274	1.84e-172	476

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g1608	10	10797887	10799191	Glsi10g1608	10	10797887	10799191	CCT
	Glsi10g1608	10	10797887	10799191	Glsi10g1608	10	10797887	10799191	ECH

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