Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1589 ATGCATGTCCACAGCACAATGAAGGTTCTGAGAGCCTACTTCTTTACAGTTTGTTCTATATACCCTCACATAATTCTTCTCATCTCTTTGAGCTCTACTGCCGGTGCTCCAACGAATGAGACTGATAGGAATGCCTTAATCAAGTTCAAAGAATCAATAACCAATGATCCACAAGAAGTACTAAGTATGTGGAATGACTCAATCCACTTCTGCAACTGGCATGGGGTTACATGCAGCAGCAGGCACCAGAGAGTTGTAGCGTTAGACCTGCACGGCAATAAGTTGCATGGAAAGATATCACCTTACATTGGCAACCTCTCCTTTCTTAGGTCCATTTATCTCCACAACAACAGCTTGTTTGGCCAAATTCCCGATGAAGTTGGTCATCTGTTTCGTCTGCAAGAGCTTGAGCTTGCCAACAACACACTGACAGGGGAGATTCCAACCAGCTTGGCAAACTGCTCTTCCCTCAAAAACATTGACCTTGGACGGAATGAGATCACAGTAGCCATCCCTAGGGAGCTTGGCTTGTTAACCAAGCTTGAAACTCTCTCTATTAACAATAATAATCTCACAGGAGGCTTACCGCCTTCTTTAGGTAATATGTCATCACTCAGACAGTTTAGTGCAACATACAACTATTTGGAGGGAAAAATTCCACATGACATAGGCCGATTAAGATATCTGTTCAATTTCCTGGTTGGTGTTAACAAACTTTCTGGTAATATCCCTTCTTCCCTTTTCAATATATCTTCCATCAACTTCTTCTCAGTTTCAGGTAATAGACTAAATGGCACTCTACCAGAGTACATAGGCTTCACTCTCCAAAATCTCCAAGCAATCCTACTCGGTGATAATGAATTTTCTGGATCAATTCCCATTTCATTATCCAATATTTCTGGTCTTCAATTCATTGACCTCTACAGCAATAATTTTGTGGGGCCAATCCCAAGCAACCTGGGAAATTTAGAAAATCTCTGGAGGCTAGGCTTAGGTGGGAATAACCTAGGAAGTAACTCAAGCAAAGACTTGGCTTTCGTGGCTTCTCTGGTGAACTGTAGCAAACTGGAGTATCTTGATCTGGGTTTGAACAATTTTGGTGGGGTTCTTCCCCAAACAGTTGGCAATCTCTCCACTAAACTCAGGCAGCTTTATTTTGATTCCAACAAAGTAAGTGGTAGTATCCCAACAGAACTTGGAAATCTGATCAACCTGGTTATCTTAACTATACAGGATAACCTCTTCACTGGCATCATCCCTCCTTCCTTTGCGAAATTCCAGAATATGCAAGTGATGTCTCTCAGTCTGAACAGATTGTCTGGACAGATTCCATCTTCCATAGGCAATCTCACTCTGCTGATTAGACTCTACTTATACAATAACAGATTAGGAGACAGCATTCCTTCAAGAAACTCCTTAAGTGGCAGCCTACCCAGGGAAGTAGGCAATCTGAAAAATATTGACATACTGGATGTCTCAGAAAATAATTTGTCTGGTGAAATTCCTGAAACCATCGGAGATTGTGCGATCCTTGAATATCTATACCTACAAGGGAATTCATTTCAAGGTAGTTTTGGCAGTGTTTATAAGGGGATTGTGGATCCAGAGGAAAGAGCAGTAGCTATAAAAGTCCTCAACCTCCAGAAGAAAGGAGCTTCCAAGAGCTTCATAGCAGAATGCAATGCCTTAAGAAGTATCCGGCATCGAAACCTTGCGAAGATCTTAACATGTTGCTCTAGCACTGATTACAAGGGCAATGATTTCAAAGCTCTAGTTTTTGAATTCATGGCAAATGGAAACTTGGAGAAATGGCTACATCCAGATGAAGGTGAAAATCAATCTTTAAACCTTCTCCATAGACTAAACATCGCAATAGATGTGGGTTCCGCTGTGCATTATCTGCACTATGAATGTGAACAACCAATCGTTCATTGTGATTTAAAGCCTAGCAATATTCTCCTAGATTCTGACATGGTTGCTCATGTAAGTGATTTTGGTTTGGCAAGACTTCTATCTGCCACCAATAAGGTTCGTCAAAATCAAAGCAGCATAATCGGACTAAAAGGAACAGTAGGCATTAGAATTGATGAGCTTGTTGAAAATGGAGTGGGTATAAGGCTTGAAGAAACAGTAACAAGCAGAATGAAAGAATTTATGCACCTCATGGCTTGGCTTGATTCAGACCCCAAAGAGAAAAAAAGCACGGCTAGACTTGAACTGAGTCATTTATGTCTTCTTCAAAGGAATAAAGTAAAATGGGGCATTAAACTTGTCGCTTGCGGAACCAGTGGTCTGCCACCTGCGACATCTAGCTGTTTCCCGGAGCTATTTTGTTCTATATACTCTCACATAATTCTTCTCATCTCTTTGAACTCTACTGCCGGTGCACCAACAAATGAGACTGATCGGAATGCTTTAATCAAGTTCAAAGAATCAATAACCAATTATCCACAAGAAGTACTTAGCATGTGGAATGACTCAATTCACTTCTGCAACAGGCATGGGGTTCTTGTTGTGGAAATTTGA 2526 0.4109 MHVHSTMKVLRAYFFTVCSIYPHIILLISLSSTAGAPTNETDRNALIKFKESITNDPQEVLSMWNDSIHFCNWHGVTCSSRHQRVVALDLHGNKLHGKISPYIGNLSFLRSIYLHNNSLFGQIPDEVGHLFRLQELELANNTLTGEIPTSLANCSSLKNIDLGRNEITVAIPRELGLLTKLETLSINNNNLTGGLPPSLGNMSSLRQFSATYNYLEGKIPHDIGRLRYLFNFLVGVNKLSGNIPSSLFNISSINFFSVSGNRLNGTLPEYIGFTLQNLQAILLGDNEFSGSIPISLSNISGLQFIDLYSNNFVGPIPSNLGNLENLWRLGLGGNNLGSNSSKDLAFVASLVNCSKLEYLDLGLNNFGGVLPQTVGNLSTKLRQLYFDSNKVSGSIPTELGNLINLVILTIQDNLFTGIIPPSFAKFQNMQVMSLSLNRLSGQIPSSIGNLTLLIRLYLYNNRLGDSIPSRNSLSGSLPREVGNLKNIDILDVSENNLSGEIPETIGDCAILEYLYLQGNSFQGSFGSVYKGIVDPEERAVAIKVLNLQKKGASKSFIAECNALRSIRHRNLAKILTCCSSTDYKGNDFKALVFEFMANGNLEKWLHPDEGENQSLNLLHRLNIAIDVGSAVHYLHYECEQPIVHCDLKPSNILLDSDMVAHVSDFGLARLLSATNKVRQNQSSIIGLKGTVGIRIDELVENGVGIRLEETVTSRMKEFMHLMAWLDSDPKEKKSTARLELSHLCLLQRNKVKWGIKLVACGTSGLPPATSSCFPELFCSIYSHIILLISLNSTAGAPTNETDRNALIKFKESITNYPQEVLSMWNDSIHFCNRHGVLVVEI 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1589 841 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 231 469 - -
Glsi10g1589 841 Pfam Leucine rich repeat N-terminal domain 800 836 IPR013210 -
Glsi10g1589 841 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Glsi10g1589 841 SUPERFAMILY L domain-like 37 336 - -
Glsi10g1589 841 Gene3D Transferase(Phosphotransferase) domain 1 524 738 - -
Glsi10g1589 841 Gene3D Ribonuclease Inhibitor 318 523 IPR032675 -
Glsi10g1589 841 FunFam Leucine-rich repeat receptor-like protein kinase 39 197 - -
Glsi10g1589 841 Pfam Leucine rich repeat 404 463 IPR001611 GO:0005515
Glsi10g1589 841 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Glsi10g1589 841 Pfam Protein kinase domain 522 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1589 841 SMART serkin_6 515 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1589 841 SUPERFAMILY L domain-like 285 526 - -
Glsi10g1589 841 Gene3D Ribonuclease Inhibitor 38 317 IPR032675 -
Glsi10g1589 841 SMART LRR_typ_2 484 508 IPR003591 -
Glsi10g1589 841 SMART LRR_typ_2 450 475 IPR003591 -
Glsi10g1589 841 SMART LRR_typ_2 106 130 IPR003591 -
Glsi10g1589 841 SMART LRR_typ_2 178 202 IPR003591 -
Glsi10g1589 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Glsi10g1589 841 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 203 470 - -
Glsi10g1589 841 SUPERFAMILY Protein kinase-like (PK-like) 522 677 IPR011009 -
Glsi10g1589 841 ProSiteProfiles Protein kinase domain profile. 514 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1589 Glsi-ChrGlsi10 10631935 10636963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1589 84 697 Receptor kinase-like Gene Family AT5G20480 32.927 1.02e-91 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi10g1589 Pkinase 1.7e-28 CL0016