Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1573 ATGAAAACAGCTTCTTTGGGGATTCACCTCGAAGGCGGCCGAAGCTCAGAAATGGCCATCAAAGCTAATAGAACTCTGGTATTGGCATGTCTTCTGTGGGTTTTCATTCTGTGCGCAACTATAGCATTCGTTCAACTCAAATTGATAGAGAATGGAAAGGACTCTTCTTCTCAGGACAAGTTCATCAGAACCGAGCACCATCCGGAAAACCCGGCCGCAGGGGATTCGGAGGGAGTGACCCACAAAGTGTTTTTCGATATAGAGATCGATGGTAAACTTGCGGGTCGCATAGTCATGGGACTTTTCGGGGCAGTGGTTCCAAAAACTGTAGAAAACTTTCGAGCACTTTGTACTGGAGAGAAAGGGGTGGGAAGAAGCGGGAAGCCTCTTCATTACAAAGGCAGCACATTCCATAGGATAATACCCAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGACGAGGTGGAGAGTCAATCTATGGTGCTAAGTTTGCTGATGAAAACTTCAAACTGAAGCACACTGGGCCAGGATACTTGTCAATGGCAAATGGTGGAACTGACACCAATGGCTCACAATTTTTTATAACAACAGTTAAAACCAGCTGGTTGGATGGTCGCCACGTTGTATTTGGCAAGGTGCTTTCAGGGATGGACGTTGTTTACAAGATTGAAGCAGAAGGAAGTGAAAATGGCCTGCCCAAAAGCAGAGTTGTTATATTAAACAGTGGAGAAATGACTTCATGA 753 0.4595 MKTASLGIHLEGGRSSEMAIKANRTLVLACLLWVFILCATIAFVQLKLIENGKDSSSQDKFIRTEHHPENPAAGDSEGVTHKVFFDIEIDGKLAGRIVMGLFGAVVPKTVENFRALCTGEKGVGRSGKPLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGAKFADENFKLKHTGPGYLSMANGGTDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVVYKIEAEGSENGLPKSRVVILNSGEMTS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1573 250 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 85 244 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 84 247 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 248 - -
Glsi10g1573 250 Gene3D - 72 250 IPR029000 -
Glsi10g1573 250 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 132 149 IPR020892 GO:0003755|GO:0006457
Glsi10g1573 250 FunFam Peptidyl-prolyl cis-trans isomerase 76 249 - -
Glsi10g1573 250 SUPERFAMILY Cyclophilin-like 79 248 IPR029000 -
Glsi10g1573 250 CDD cyclophilin_ABH_like 81 246 - -
Glsi10g1573 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 208 223 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 195 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 149 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 116 IPR002130 GO:0000413|GO:0003755
Glsi10g1573 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 207 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1573 Glsi-ChrGlsi10 10528184 10530486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1573 95 227 U-box Gene Family AT5G67530 44.776 1.01e-25 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1573 10 10528184 10530486 Glsi10g1573 10 10528184 10530486 ECH