Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1562 ATGGGATTAGAAAAGAGGACACCCCTCATGATTGCTTCCTTATTCGGAAGCACCAAGGTGCTGAAGTATATCATTGAAACAGGCAGAGTTGATGTGAACAGGGCCTGTGGTTGTGATAGCGCCACTGCTCTCCATTGTGCTGTTGCTGGTGGCTCTGAGTCTTCGCTCCATATTGTTAAGCACTTGCTTGATGCACAGGCAGATGCTGATTGCCTTGATGCTAGTGGAAACAAGCCTGTTAATCTGATTGCTCCTGCCTTTAGTTCTTCGTCCAATTCACGAAGGAAGGCGATGGAGTTGTTGCTGAGAGGTGATAAATTAGGTGGCGAGAGACATCAAATCATGAACCAGGAGGTGGACCAACCAAAAATTGCAGAGAAGAAAGAATATGCTGTTGATATATCATTGCCTGACATAAACAATGGTATATATGGAACAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCGCGCAAGTACCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGAACCTGCCAGAAGGGGGATGCATGTGAGTATGCACATGGCGTTTTTGAGTCATGGCTCCATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCTCTAGGAAAGTTTGCTTCTTTGCTCATAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCCTTTTCAGCTAGTGCACTTGACTCAACAGCTATGAGTCCATTGGCTCTTAGTTCCTCATCTATGCCAATGTCAACTGTTTCAACACCCCCCTTGTCTCCTTTGGCAGCTTCATCTCCTAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCACCATCCTTGCAGCTCCCAGGTAGTCGGCTGAAGGCTGCTTTAAGTGCCAGGGATCTTGATCTGGAAATGGAGCTGCTTAGACTAGAAAGTCCTGCTAGCCAAAGGCAGCAGCAGCAGTTAATAGAAGAGATGGCTCGACTCTCTTCTCCATCTTTCAGGAACAATGAATATAGTAGAATTGGTGATCTGAAGCCAACTAACCTTGATGACCTTCTGGGATCTGTTGATGCCTCTATTCTATCTCAATTGCATGGACTTTCAGCACAACCCACAATGCCTACGCAGTTGCAATCTCCAAACGGGCTTCAAATGCGCCAAAACATGAACCAACTTCGAGGAAGCTATCCAAGCAACTTCCCTTCTTCTCCGGGGAGAAACCCGTCAACATTTGGGTTTGACTCATCAGCTGCTGTGGCAGCAGCAGTGATGAATTCTAGATCTGCTGCCTTAGCAAAGCGAAGCCAAAGTTTTATTGATCGTGGTGCGATGAGCCACCATCTTGGGCTTTCTTCAGCTTCCAACCCCACCTGCAGAATGTCCTCTGGCCTTTCAGATTGGAGATCCCCCGACGGGAAATTGGATTGGGGCGTGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCTTCGTTTGGGTTCAGAAATAATGCAAAAACTGACACCTCCTTGGCACATGCAGAACATTTAGAGCCAGATGTCTCGTGGGTTAATTCATTGGTCAAAGACGTTCCCTCTGAGAGGCAGCAGTATGATCTCAGTAAAGAGATGCTTCCACCATGGGTGGAGCAGCTGTATATAGAACAGGAGCAAATGGTGGCATAA 1776 0.4741 MGLEKRTPLMIASLFGSTKVLKYIIETGRVDVNRACGCDSATALHCAVAGGSESSLHIVKHLLDAQADADCLDASGNKPVNLIAPAFSSSSNSRRKAMELLLRGDKLGGERHQIMNQEVDQPKIAEKKEYAVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASALDSTAMSPLALSSSSMPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLRLESPASQRQQQQLIEEMARLSSPSFRNNEYSRIGDLKPTNLDDLLGSVDASILSQLHGLSAQPTMPTQLQSPNGLQMRQNMNQLRGSYPSNFPSSPGRNPSTFGFDSSAAVAAAVMNSRSAALAKRSQSFIDRGAMSHHLGLSSASNPTCRMSSGLSDWRSPDGKLDWGVNGDELNKLKKSASFGFRNNAKTDTSLAHAEHLEPDVSWVNSLVKDVPSERQQYDLSKEMLPPWVEQLYIEQEQMVA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1562 591 ProSiteProfiles Ankyrin repeat profile. 39 74 IPR002110 GO:0005515
Glsi10g1562 591 SUPERFAMILY Ankyrin repeat 4 81 IPR036770 -
Glsi10g1562 591 Gene3D - 3 140 IPR036770 -
Glsi10g1562 591 SMART ANK_2a 39 71 IPR002110 GO:0005515
Glsi10g1562 591 SMART ANK_2a 4 34 IPR002110 GO:0005515
Glsi10g1562 591 Gene3D - 189 251 - -
Glsi10g1562 591 PANTHER UNKEMPT FAMILY MEMBER 1 561 IPR045234 -
Glsi10g1562 591 SMART c3hfinal6 223 246 IPR000571 GO:0046872
Glsi10g1562 591 SMART c3hfinal6 188 214 IPR000571 GO:0046872
Glsi10g1562 591 ProSiteProfiles Zinc finger C3H1-type profile. 188 215 IPR000571 GO:0046872
Glsi10g1562 591 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 213 IPR000571 GO:0046872
Glsi10g1562 591 Pfam Ankyrin repeats (many copies) 6 57 IPR002110 GO:0005515
Glsi10g1562 591 FunFam Zinc finger CCCH domain-containing protein 66 146 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1562 Glsi-ChrGlsi10 10442612 10444387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1562 1 565 C2H2 Transcription Factor Family AT5G12850 41.063 1.38e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi10g1562 Ank_4 9.6e-06 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1562 10 10442612 10444387 Glsi10g1562 10 10442612 10444387 ECH