Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1556 ATGGAAAATTACTTGTATTCTCATTCTGGGTGGCCTCTGGGTACAACCACAACTTGGTCTCAGTCCAGCTCTGTACCAACCACTGATCCTCCCTTTTCAGTCCCACCGCCATTACTGCCTCATGTCTCTGACACTGCCTCTCTTCAATTCTGTGAGTTCCCTTCGTGGCCCTTACCAATTGAATCGGTTGCAGAGGATAGAGCTGCAAGTGCTTCCAAGAGCCATAGCCAAGCAGAGAAACGACGCAGGGACAGGATCAATGCTCAGCTCGCTACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAACGAAAAGCCATGGATATTAGCACAGCCTTCACAGTTCCAACCGAGACTGACGAAGTATCAATAATAGATCCAGCTCAGGATGAAAGTTTCACTAAAGTAAATTACAAACCGAAGGGCAAAAACATAGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCTCTGAGCTGATCCAAGTGCTCAAGGGCCTCAGGCTCACTGCGGTTAAAGCTGACATAGCCAGTGTGGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAATGAAGAGAGTGTTTGCCTTACCACTCTCAAACAGTCCCTTAAATCAGCTGTCACTAAAATTGCTTCATCATCCATTGCGTCAAATTGTCCTGCTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACCTACAGTAA 783 0.4547 MENYLYSHSGWPLGTTTTWSQSSSVPTTDPPFSVPPPLLPHVSDTASLQFCEFPSWPLPIESVAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDISTAFTVPTETDEVSIIDPAQDESFTKVNYKPKGKNIVIKASVCCDDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDNEESVCLTTLKQSLKSAVTKIASSSIASNCPARSKRQRFFLPSHYLQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1556 260 CDD bHLH_AtAIG1_like 65 142 - -
Glsi10g1556 260 PANTHER TRANSCRIPTION FACTOR BHLH30 62 257 IPR045847 GO:0003700|GO:0006355
Glsi10g1556 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 122 IPR036638 GO:0046983
Glsi10g1556 260 Gene3D - 64 127 IPR036638 GO:0046983
Glsi10g1556 260 Pfam Helix-loop-helix DNA-binding domain 73 119 IPR011598 GO:0046983
Glsi10g1556 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Glsi10g1556 260 SMART finulus 76 125 IPR011598 GO:0046983
Glsi10g1556 260 CDD ACT_UUR-ACR-like 167 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1556 Glsi-ChrGlsi10 10388069 10389313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1556 66 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.739 5.34e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g1556 HLH 2.6e-10 No_clan