Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1555 ATGATGGGTGCCACCTCCAACACTAACAACAACGCCTCTGCCGATCGGATCAAAGGCTCTTGGAGCCCCCAAGAGGACGCCACTCTCATCAAGCTCGTCCGGCAGCACGGCCCCCGTAATTGGTCTCTCATTAGCATCGGCATACCCGGCCGCTCTGGCAAGTCTTGCAGGCTCAGGTGGTGCAATCAGCTCAGCCCCACCGTCCAGCATCGACCTTTTACCCCCGCCGAGGATGCCATCATCGTCCAGGCTCATGCCGTCCACGGCAACAAGTGGGCAACCATTGCCCGCCTCTTGCCCGGTCGTACGGATAACTCCATCAAGAACCACTGGAACTCCACTCTTCGTCGCCGTCGAGCTGCGGAGTTGTCTTCCGCCTCCGCGTCGTCGGAGTCCAACTCCATTTTGATAAAGAAGAAGCGCCCGGGGCCATTCGATACCCTGGATGCCTCGGACCTGTCCGAGTCGGCGCAGCCATTGAAGCGTGTTTGCCTTCGCCGGATTTCACCGGAAAACAACAGTTGCGACGATCCAATAGAGAAAAAAGGGTTGGTGGGACATGTGACGACTTCATTGAGTTTGTTACCGCCGGGGGACAGCACGGTGCCGGCGGGTAACAAATTGGAAGAAGAGAAGGATGAAGAAAGCGAGGATGAAGGGAATGGGAAGGTAGAGAAGTCCTGCCTACAAAGGATGATGCAGCGCATGATAGCAGAGGAGGTTAGGAATTACATGGATAATTTGCGGGCTGACGATAGGCTCATCCTCAGAACTGGGTTGGGCCTCTACCCACCCGTTCATAAGTAA 807 0.5601 MMGATSNTNNNASADRIKGSWSPQEDATLIKLVRQHGPRNWSLISIGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDAIIVQAHAVHGNKWATIARLLPGRTDNSIKNHWNSTLRRRRAAELSSASASSESNSILIKKKRPGPFDTLDASDLSESAQPLKRVCLRRISPENNSCDDPIEKKGLVGHVTTSLSLLPPGDSTVPAGNKLEEEKDEESEDEGNGKVEKSCLQRMMQRMIAEEVRNYMDNLRADDRLILRTGLGLYPPVHK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1555 268 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g1555 268 SMART sant 17 66 IPR001005 -
Glsi10g1555 268 SMART sant 69 117 IPR001005 -
Glsi10g1555 268 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Glsi10g1555 268 CDD SANT 72 115 IPR001005 -
Glsi10g1555 268 Gene3D - 72 118 - -
Glsi10g1555 268 Gene3D - 17 69 - -
Glsi10g1555 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Glsi10g1555 268 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Glsi10g1555 268 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Glsi10g1555 268 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Glsi10g1555 268 MobiDBLite consensus disorder prediction 190 225 - -
Glsi10g1555 268 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Glsi10g1555 268 MobiDBLite consensus disorder prediction 1 18 - -
Glsi10g1555 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Glsi10g1555 268 FunFam MYB transcription factor 18 69 - -
Glsi10g1555 268 PANTHER MYB PROTEIN-RELATED 18 137 - -
Glsi10g1555 268 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1555 Glsi-ChrGlsi10 10383562 10384368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1555 14 150 MYB Transcription Factor Family AT3G50060 59.420 3.22e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1555 Myb_DNA-binding 7.9e-16 CL0123