Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1554 ATGTCGACCCAGCAAGACGCTCAGGTGTTCAATTGGCATTATAATGAGCTGGATGGCCGAAACCTCGAAGTCCGAGGCCGAACACTCTTCTTCGTCATTATCCTTTTCTCTATTATCCTGATAGTTACCCTTCTCTTCCTTTACGTTCGTTGGATCTGCCGGTACCGAGGTCACCTTCCCACTACCTTCAACTCCAGCCAAGTGCGTCGCGCGCCGACTCCTCCGCCATCGAAGGGTCTCGACCTTGCTGCGATCAAGAAATTGCCCATAATCTTGCACCAGACGCCGTCGGATTCCAATTGTGCATTGGAGGAAACAGAGTGCTGTATTTGTCTGAGTGCTTTCGAAGATGGTGAGAAATTGAAGGTCTTACCCAGCTGCGGACATAGTTTCCATTGCGAGTGTGTTGATAACTGGCTTATTAATAACTCCAGTTGCCCACTCTGCAGATCTTCTGTCAAGGTTGATTCTTCCTTTCCACAGATTTTGATTCAAGAACCACCCATAAGAATCGACCTCCAATTCTAG 528 0.4811 MSTQQDAQVFNWHYNELDGRNLEVRGRTLFFVIILFSIILIVTLLFLYVRWICRYRGHLPTTFNSSQVRRAPTPPPSKGLDLAAIKKLPIILHQTPSDSNCALEETECCICLSAFEDGEKLKVLPSCGHSFHCECVDNWLINNSSCPLCRSSVKVDSSFPQILIQEPPIRIDLQF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1554 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 157 - -
Glsi10g1554 175 SMART ring_2 108 149 IPR001841 -
Glsi10g1554 175 SUPERFAMILY RING/U-box 101 157 - -
Glsi10g1554 175 CDD RING-H2_EL5-like 107 150 - -
Glsi10g1554 175 Pfam Ring finger domain 107 150 IPR001841 -
Glsi10g1554 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Glsi10g1554 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1554 Glsi-ChrGlsi10 10378882 10379409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1554 5 158 C3H Transcription Factor Family AT3G11110 45.455 9.23e-39 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1554 10 10378882 10379409 Glsi10g1554 10 10378882 10379409 CCT