Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1553 ATGGATGACCAATCATCCCAACCCTCTCGCCCTCACTCTCCCCAAGAAGTAGAACCCAGACCCGCCGCCACCACCGCTCCCACCACCACTCCCTCTCCAACGTCTCGCAGATGCAAAGGCAAAGGCGGACCTGACAACAATAAATTTAGGTACCGTGGGGTGAGGCAACGAAGCTGGGGTAAATGGGTCGCCGAGATCCGCGAGCCTCGCAAGCGAACCCGCAAGTGGCTTGGCACCTTCGCCACCGCGGAGGACGCTGCTCGAGCCTACGACCGCGCCGCCATCATCCTTTATGGCTCTAGGGCTCAGCTCAACCTGCAACCCTCTGCCTCCTGCTCTTCCCAATCCTCCTCGTCCTCTTCTTCCTCTACGCAAACCCTTCGACCCTTGCTCCCCCGTCCCTCTGGCTTCGGCTTTAGCTTCTCCTCCGCCGTCTCCCCTCTCCAGACGGTGTTGAATGCTGCAGCCGCCACCACATCCGGGTTTGTTCCCTACGGGGTCTACTCCGCGGGTAATAATAGCCCACAGGTGATGTGCTCTATCAACGACACAGTACAACATCATCCTCAACGAGTGGGGCGAGTGCAACAACAAGAACAGCAGTATCAATCCCCAGAATCTGATGGAAGTGCAATAGGTAGTGCTGTTGATACATCCAACAGAACAACCTCGTACCAGAACCATAGTCACGATCCTCTGTCGAATCAACAACAACATAATCAGAATTGCATGTACGATGATATAAGCTCCTTGGTGGGATCAAGCTTGGGATATTCACAGACTGTGGTTGCCCCGGCGGCCCTGGATCCAGTGGAGACAGTTGGTATCGGATCTCCGTCTATGTGGCCAGTGACGGATGAAGAAGAGTACCCACCTAGTCTATGGGACTATAATGATCCTTTCTTCTTTGATGTTTGA 918 0.5458 MDDQSSQPSRPHSPQEVEPRPAATTAPTTTPSPTSRRCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSASCSSQSSSSSSSSTQTLRPLLPRPSGFGFSFSSAVSPLQTVLNAAAATTSGFVPYGVYSAGNNSPQVMCSINDTVQHHPQRVGRVQQQEQQYQSPESDGSAIGSAVDTSNRTTSYQNHSHDPLSNQQQHNQNCMYDDISSLVGSSLGYSQTVVAPAALDPVETVGIGSPSMWPVTDEEEYPPSLWDYNDPFFFDV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1553 305 MobiDBLite consensus disorder prediction 1 52 - -
Glsi10g1553 305 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Glsi10g1553 305 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 236 - -
Glsi10g1553 305 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Glsi10g1553 305 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Glsi10g1553 305 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Glsi10g1553 305 MobiDBLite consensus disorder prediction 22 36 - -
Glsi10g1553 305 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Glsi10g1553 305 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Glsi10g1553 305 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Glsi10g1553 305 MobiDBLite consensus disorder prediction 189 238 - -
Glsi10g1553 305 MobiDBLite consensus disorder prediction 109 129 - -
Glsi10g1553 305 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Glsi10g1553 305 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1553 Glsi-ChrGlsi10 10374439 10375356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1553 36 302 AP2-EREBP Transcription Factor Family AT2G40220 44.482 5.09e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi10g1553 AP2 1e-12 CL0081