LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1551	ATGGTTAAAGTTGTCATTTTCTGGCGTTTTAACCGGGAGTCGTCGACCAAACGCAAGCAAACCGCGATCATAAAACGACATACGCTGTTCAACTTCAAACTGTTACAAACGCGTACCAAAGTCGTTCCCTCCAATCCCAGCCTTACGGCAGCTGACGTCACCGCCGGTCACAATGCGCGGCCAAGGCCATTTGCTCCCGAGGGGTCCGAATCCGATGCTTCGCTTCCCACCCAAACTCCCACTCCCAATTCTCCGTTTATATCCTTTCCACCTCACTATCCCCATCATCACCTTCACCTCCGGTGTACCTTTCCATCTTCCTTTCCCTTCCCGGATACATTCATGAACCGCTCCAACCCGAGTCGGCCTCATCACGGCGGCCGAGAGGACTGTTGGAGCGAGGGTGCCACCGAGACATTAATCGAGGCCTGGGGTGATCGTTACATCCAGCTCAAACGTGGAAATCTCCGTCAGAAGGACTGGACGGAGGTTGCCGACACCGTCAACGCCCGTCAAAATGGCGTCAAGCCTCGCAAGACCGACATTCAGTGCAAAAACAGGATCGACACCCTCAAGAAGAAGTTCAAGGTCGAGAAGTCGAAGCCGCCTCCGTCCAAGTGGGTCTTCTATCACCGTCTCGATTCTCTGATCGGCGCTCACGCAAGCGTCCCTGACAAGAAACCCACCACCGTCACTTTAACCATCAAATCCTCTAGGCCGAGACCCAGCCCCGCCCCGATTCGTGGGTCAGCTCTGGCGCTCCATTCCGGTGGATCTTCGAGGCTGGATTCCGGTGGTGTGTCTATGGAGAGTTCACTTGGGGACGACGACGACGACGACGACACTGATGATTTGGGGGTTGACGGGAGAGCCGCGAGGAAGCAAAGATTTGAGACGGTTGATTTTTCTGATGGAGCTGCGTTAAGAGAATTGGCGAGGGCGATTCTCAAGTTTGGGGAGATTTATGAGAGAATCGAGAGCTCGAAGCAGCAGCAGATGATCGAGTTGGAGAAGCAGAGAATGGAGTTTACTAAGGATCTCGAATTTCAAAGAATGAACATGTTCACAGATACTCAATTGGAGGTGGAGAGAATGAAGCGCCCCAAGTATGCCACCACCTCAGGTCACGAAGCTCATCAGTTTCCAGCAGTTGCTAGCATCTATAGTAAATCATTCATGGAGTTTTTATTTATATAA	1197	0.5213	MVKVVIFWRFNRESSTKRKQTAIIKRHTLFNFKLLQTRTKVVPSNPSLTAADVTAGHNARPRPFAPEGSESDASLPTQTPTPNSPFISFPPHYPHHHLHLRCTFPSSFPFPDTFMNRSNPSRPHHGGREDCWSEGATETLIEAWGDRYIQLKRGNLRQKDWTEVADTVNARQNGVKPRKTDIQCKNRIDTLKKKFKVEKSKPPPSKWVFYHRLDSLIGAHASVPDKKPTTVTLTIKSSRPRPSPAPIRGSALALHSGGSSRLDSGGVSMESSLGDDDDDDDTDDLGVDGRAARKQRFETVDFSDGAALRELARAILKFGEIYERIESSKQQQMIELEKQRMEFTKDLEFQRMNMFTDTQLEVERMKRPKYATTSGHEAHQFPAVASIYSKSFMEFLFI	398

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1551	398	MobiDBLite	consensus disorder prediction	46	85	-	-
	Glsi10g1551	398	Coils	Coil	322	342	-	-
	Glsi10g1551	398	Gene3D	-	132	197	-	-
	Glsi10g1551	398	Pfam	Myb/SANT-like DNA-binding domain	129	216	IPR044822	-
	Glsi10g1551	398	MobiDBLite	consensus disorder prediction	228	287	-	-
	Glsi10g1551	398	FunFam	trihelix transcription factor ASIL2	132	197	-	-
	Glsi10g1551	398	PANTHER	TRIHELIX TRANSCRIPTION FACTOR ASIL2	93	367	IPR044823	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1551	Glsi-ChrGlsi10	10356269	10359290	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1551	128	362	Trihelix Transcription Factor Family	AT1G54060	38.060	2.16e-35	132

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Glsi10g1551		Myb_DNA-bind_4	5e-24	CL0123

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