Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1550 ATGAAAGAGTACGAGCCCCGTTCAAGCTCTTCTTGCGCAGCTTGCAAGCTCTTGAAAAGGAGATGCACGCCCAATTGTATATTTGCTCCCTACTTTCGTTCCGACGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTATTTGGAGCCAGCAACGTAAGCAAGATCCTCATAGAAGTGCCGGAGGAGCAGAGAGAGGACACGGTGAACTCGCTGGCCTACGAGGCAGAGGCAAGGCTCAAAGACCCTGTTTATGGATGCATTGGTGCCATAGCTCTTTTGCAGAGGAAGATGGTGGAGCTTCAGCAAGACTTGGCCATTGCGAAGGCTCGTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCACCCCCTCCACTGATCATATCTTCAATGCCAATGTTAGCTTGGCTCCATTCCCCGACACTTCCTCCTCTTGCGGTGACTTCAATGATGGCTTCTGCCACAGCTCTTCATCTCAATTATTGGGCCGACATGAATCCGTGGATGATTTTTTTCAAATTCCATATATATTTTGA 534 0.4963 MKEYEPRSSSSCAACKLLKRRCTPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLKDPVYGCIGAIALLQRKMVELQQDLAIAKARLAAAAAAAAATTPSTDHIFNANVSLAPFPDTSSSCGDFNDGFCHSSSSQLLGRHESVDDFFQIPYIF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1550 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 120 - -
Glsi10g1550 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Glsi10g1550 177 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Glsi10g1550 177 Coils Coil 90 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1550 Glsi-ChrGlsi10 10355657 10356190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1550 1 149 AS2 family AT3G11090 64.901 2.59e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi10g1550 LOB 4.5e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1550 10 10355657 10356190 Glsi10g1550 10 10355657 10356190 ECH