Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1544 ATGAAAAAGAACTGGAATTTCGGTCCGTTCAGGGATCGTCGGGGACTTTTGCGCTTTGCGGTGGTGTGTCTGCTCTTTCAGAGCTTGGGTCTGTGCTGGTCTTTAAATGACGAAGCTAAGGCTCTTTTGAAGTTTAGGCAGAGAATAGTGAGCGACCCTTTTGGTGCTTTGTCAAATTGGATTGATGATGAAGGAGAGGTTGCTCCGTGTAATTGGTTCGGAGTTCACTGCTTAGATAGAAGAGTTGTGGTCTTGAATTTGAAAGATCTTTGCCTGGTAGGAACTCTGGCACCTGAGCTTGCAAACCTTGTTCGTATAAAGTCCATTATTTTGCGGAACAATTCTTTCTCTGGGATCATTCCCGAAGAAATTGTCAATTTACAAGAGTTGGAGGTTTTGGATTTAGGATACAACAACTTAAGTGGAGCTATACCAGTAGATCTTGGGAGTAATATCTCACTAGCAATCCTTTTGCTGGATAGCAATGAACTTCTTGGTGGCTTCTCTCCTGAAATTAACGAACTGAAGATGCTTTCTGAAACTCAAGTAGATGAAAACCAATTAACTAATGCAGCTAAAATTCCATCTTGTGTAGGAAGTTCCATCACAAGAAATGTTGGCGAAGATAATGGAGGTCTTCGAAGACTACTACAAACTAGACAAGATCCACGTAATCGTGAAGCTGATCCACCTCTGATTAGCCCTACCCCATCCCCTCTACCAGAACCTTCAGATTCCCCATCTGCATCAGCCATACCACCACCAACACCAACACCAAAGCCGGCTTCACCGGGTCAAAATGCTTCTACATCTCCTTCTCCTCCCACCCTGTCTACACCAGGCTTGGGAACACAATCTAAAAGAAGCCCCTCTAAGAATCATCGTGTTGCAATTTTGGCTGGAGTTATAGGTGGTGCTATATTTCTTCTTATTTCAATAATTGGCATATACCTCTGTAAAACCAATAAGGTGGCTACTGTCAAACCTTGGGCCACTGGACTGAGCGGACAGCTTCAGAAGGCATTTGTGACTGGTGTGCCAAAGCTAAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTACTTGGTACTTCACCCATTGGAACAGTGTACAAAGGGACTTTATCTAGTGGAGTTGAAATTTCTGTAGCGTCTGTTACAGTGACATCATCCAAGGATTGGTCAAAGACTTCAGAAGTGCAGTTTAGGAAAAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTCAACCTAATTGGATATTGTGAAGAAGAAGAGCCTTTCACCAGAATGGTGGTTTTCGAATATGCACCTAACGGATCACTCTTTGAGCATTTGCACATAAAAGAAGCTGAGCACTTGGATTGGGAAACAAGACTGAGAATTGCAATGGGCATGGCTTACTGCCTGCAACATCTGCACCAATTGGACCCTCCTATAACCCATAGCAATTTGAATTCTTCAGCTGTCTGTCTTAGTGAGGACTATGCAGCTAAAATTGCCGATTTGAGTTTCTCGAATGAAATAGTTTCAGCTGAGGTAAAGACCAGGGGCAGAAAACACATTGATGTGCTATTGGCAACCCTAGAAAGTAACGTTTATAGCTTTGGTGTTGTATTATTTGAAATGGTAACTGCTCGGCTCCCGTATTCAGTGGACAATAATGGCTCAGCTGAAAACTGGGCATCAGACTATTTAAAAGTGGACCGTCCCTTGAAAGAAATGGTGGATCCAACTCTAGTATCTTCCAAAGAAGAGCAGGTGGAACAAGTTGCTGAATTGATTAAGTCTTGTGTCCACACTGATCCAAAGCAGAGACCAACAATGAAAGAAGTGAGTGGGAGATTAAGAGAGATAACAAAGATAACACCTGATGCAGCCGTTCCTAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTGTTCTACAGATGCAAGCTAA 1959 0.4252 MKKNWNFGPFRDRRGLLRFAVVCLLFQSLGLCWSLNDEAKALLKFRQRIVSDPFGALSNWIDDEGEVAPCNWFGVHCLDRRVVVLNLKDLCLVGTLAPELANLVRIKSIILRNNSFSGIIPEEIVNLQELEVLDLGYNNLSGAIPVDLGSNISLAILLLDSNELLGGFSPEINELKMLSETQVDENQLTNAAKIPSCVGSSITRNVGEDNGGLRRLLQTRQDPRNREADPPLISPTPSPLPEPSDSPSASAIPPPTPTPKPASPGQNASTSPSPPTLSTPGLGTQSKRSPSKNHRVAILAGVIGGAIFLLISIIGIYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVLGTSPIGTVYKGTLSSGVEISVASVTVTSSKDWSKTSEVQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMVVFEYAPNGSLFEHLHIKEAEHLDWETRLRIAMGMAYCLQHLHQLDPPITHSNLNSSAVCLSEDYAAKIADLSFSNEIVSAEVKTRGRKHIDVLLATLESNVYSFGVVLFEMVTARLPYSVDNNGSAENWASDYLKVDRPLKEMVDPTLVSSKEEQVEQVAELIKSCVHTDPKQRPTMKEVSGRLREITKITPDAAVPKLSPLWWAELEICSTDAS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1544 652 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Glsi10g1544 652 Gene3D Phosphorylase Kinase; domain 1 331 441 - -
Glsi10g1544 652 Gene3D Ribonuclease Inhibitor 34 210 IPR032675 -
Glsi10g1544 652 FunFam Inactive receptor-like serine/threonine-protein kinase 333 441 - -
Glsi10g1544 652 SUPERFAMILY L domain-like 33 191 - -
Glsi10g1544 652 MobiDBLite consensus disorder prediction 230 262 - -
Glsi10g1544 652 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Glsi10g1544 652 MobiDBLite consensus disorder prediction 219 291 - -
Glsi10g1544 652 FunFam Nuclear pore complex protein NUP107 35 196 - -
Glsi10g1544 652 MobiDBLite consensus disorder prediction 263 291 - -
Glsi10g1544 652 Pfam Protein tyrosine and serine/threonine kinase 361 619 IPR001245 GO:0004672|GO:0006468
Glsi10g1544 652 SUPERFAMILY Protein kinase-like (PK-like) 342 620 IPR011009 -
Glsi10g1544 652 ProSiteProfiles Protein kinase domain profile. 359 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1544 652 Gene3D Transferase(Phosphotransferase) domain 1 442 633 - -
Glsi10g1544 652 PANTHER PROTEIN MALE DISCOVERER 2 16 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1544 Glsi-ChrGlsi10 10334616 10337904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1544 19 617 Receptor kinase-like Gene Family AT5G16000 26.592 6.62e-52 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Glsi10g1544 PK_Tyr_Ser-Thr 6.1e-31 CL0016