LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1539	ATGGCTCCCAACCTCGAATGTCGCATGTACGAGGCTAAGTACCCGGAGGTGGACATGGCCGTTATGATACAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCACTACTCGAGTACAACAACATCGAGGGCATGATCTTGTTCTCGGAGCTCTCTCGCCGTCGGATTCGTAGTATTAGCAGTCTCATCAAAGTGGGTCGCATCGAGCCCGTCATGGTCCTCAGGGTCGACAAGGAAAAGGGCTACATCGATTTGAGCAAGAGAAGGGTCTCTGAAGAGGATATCCAGGCTTGCGAGGAGAGGTACAACAAGAGCAAGCTTGTCCACTCCATCATGCGCCACGTTGCCGAGACTGAAAATATCGATTTAGAGGAGCTGTATGTTCACATTGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGGCATTTAAAATAATTGTGACTGACCCTGATACAGTTTTGAATTCCCTCACCCGTGAAATCAAGGAGGTTGGTCCTGATGGGCAGGAGGTTACCAAGGTGGTTCCAGCTGTGTCTGAAGAAGTTAAGGAATCTCTAGTAAAGAATATAAGAAGACGAATGACCCCGCAGCCCTTGAAAATTAGAGCAGATATTGAAATGAAATGTTTTCAGTTTGATGGAGTCCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGCTGGAAATAATGATTGCCCTGTAAAAATTAAACTTGTTGCTCCCCCACTTTATGTTCTTACCACTCAAACTCTGGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCTATTGTTGCTTGCACTGAAGCAATAGAGCAGCACAAGGGTAAACTAGCTGTGAAGGAGGCACCCAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAACACATGGCTAAGCTTCGCCAAGATAACGAGGAGATCAGTGGCGATGAAGATAGTGAGGAGGAAGAAGATACAGGAATGGGAGAGGTTGATGTGGAGAACCAGGGTACTGGGATAACGGAGTGA	1026	0.4669	MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETENIDLEELYVHIGWPLYRKYGHAFEAFKIIVTDPDTVLNSLTREIKEVGPDGQEVTKVVPAVSEEVKESLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNNDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIVACTEAIEQHKGKLAVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENQGTGITE	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1539	341	FunFam	Eukaryotic translation initiation factor 2 subunit 1	202	324	-	-
	Glsi10g1539	341	CDD	S1_IF2_alpha	15	90	IPR044126	GO:0003723
	Glsi10g1539	341	Coils	Coil	303	323	-	-
	Glsi10g1539	341	Gene3D	-	3	91	IPR012340	-
	Glsi10g1539	341	ProSiteProfiles	S1 domain profile.	18	89	IPR003029	GO:0003676
	Glsi10g1539	341	SMART	S1_6	16	89	IPR022967	-
	Glsi10g1539	341	SUPERFAMILY	Nucleic acid-binding proteins	12	94	IPR012340	-
	Glsi10g1539	341	Pfam	Eukaryotic translation initiation factor 2 alpha subunit	127	257	IPR011488	GO:0003723\|GO:0003743
	Glsi10g1539	341	MobiDBLite	consensus disorder prediction	305	341	-	-
	Glsi10g1539	341	Pfam	S1 RNA binding domain	15	89	IPR003029	GO:0003676
	Glsi10g1539	341	FunFam	Eukaryotic translation initiation factor 2 subunit alpha	4	91	-	-
	Glsi10g1539	341	MobiDBLite	consensus disorder prediction	313	329	-	-
	Glsi10g1539	341	Gene3D	EIF_2_alpha	202	324	IPR024055	-
	Glsi10g1539	341	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1	1	330	IPR011488	GO:0003723\|GO:0003743
	Glsi10g1539	341	SUPERFAMILY	eIF2alpha middle domain-like	91	196	IPR024054	-
	Glsi10g1539	341	Gene3D	Translation initiation factor 2; subunit 1; domain 2	92	195	IPR024054	-
	Glsi10g1539	341	FunFam	Eukaryotic translation initiation factor 2 subunit alpha	92	196	-	-
	Glsi10g1539	341	SUPERFAMILY	eIF-2-alpha, C-terminal domain	200	316	IPR024055	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1539	Glsi-ChrGlsi10	10317724	10321260	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1539	2	341	Eukaryotic Initiation Factors Gene Family	AT5G05470	80.645	0.0	529

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g1539	10	10317724	10321260	Glsi10g1539	10	10317724	10321260	ECH