Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1536 ATGACAATACGAAAGGGCAATGAACAGGTAGAGTTGGTGGGTAGTGTAGAATCCGCGTGAATATACTTAACATATCTGAGTTTATCTGTACTGAATTCGCCAGCTAAATCCAGAATCAAAAGTATTTATCTCAGAAGTTCACAGGGGAGAATAGGAGCTCCGGAGAGAACCAAAATAACACAAAAGGCAACAGCACCCCCTACCCTGACACCTCCAACCAGATACGAAGAACAAAACCAGTGTGACACGGCGGAGAGCTGCGAAGCCATGGACTCCGACTTCCCCAACAAAGCGTTAACTAGCACGCGTTTTTCTGAGATGAACCCGCCACTTTCCGAGCCGGTACTCCAAGCCCTATCAGAGTTTGGATTCGAGTTCTGCACGCCGGTTCAAGCCGCCACGATACCCTTGCTATGCAGTTTCAAGGACGTGGCCGTCGATGCCGCCACCGGTTCAGGAAAAACCCTAGCATTTGTCGTTCCACTTGTTGAGATTCTTCGCCGGTCCTGTTCTAATCCCAAACCTCATCAGGTACTTGGAATAATTATATCTCCTACAAGGGAGTTATCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACATTAGTTAATGTTGAATCCATGCTCCTCGTTGGTGGAGTAGACGTAAAAGCAGACATGAAGAAAATAGAGGAAGGAGGAGTGAATATATTGATTGGCACACCTGGGCGGCTATATGACATAATGGATCGGATGGATGTATTGGATTTTAAAAACCTTGAGATTTTAATTTTAGATGAGGCTGATAGACTCCTAGATATGGGATTCCAGAAGCAGATAAATTCCATTATATCTCACTTACCAAAGCTTCGCAGAACTGGTCTTTTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCAGGATTGAGAAACCCTGTGAGGGTTGAAGTCCGAGCAGAATCAAAACCAGTCAATGATCCTGCAGTATCGCAACAATTAGCCTCTTCAAAGACACCTTCTGGACTTCACATTGAGTACTTGGAATGTGAGGCTGATAAGAAACCATCTCAGCTTGTAGATATCATTATGAAGAACCGCTCAAGAAAAATGATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGTTGTACTTCCTCGCCTCTCTGTTTTGAAGGGTTTCTCCTTGATCCCCCTCCATGGAAAAATGAAGCAGGCTGCAAGGGAGAAAGCATTAGCTTCATTTACATCTCTTTCAAATGGATTTCTTCTATGTACGGATGTTGCAGCACGTGGACTTGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCACAAGATCCGAATGTTTTCATACATAGAGTTGGCCGAACTGCTCGGCTGGGTAGACAAGGGCATGCTATTGTCTTCTTATTGCCAAAGGAGGAATCTTATGTTGAATTCCTGCGTATAAGAAGAGTCCCCCTTCAAGAGAGAAGTTGCTCCAATGATGCATCTGATATTGTTCCTCAGATTCGTTCCATTGCAAAAAAAGATCGTGATGTCATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCATATAAAGAGCATCACTGCTCTTACATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTATTGCAACTTCCTTCAATATCAGAGGTAAAACAGCAGTCACTTTCCACCAAAGGTTTTGTACCAGTTGAAGATATTAATTTGAAGGATATTAAGTACAGGGATAAATCTCGTGAGAAACAAAGGAAGAAGAACTTGCAAACAAAGAAAGAAGCCAAAGAGAAAGAGACAAAACCTCAAAAACCCAACAAAACTCCAAATGCAGATATTATAACAAGGAAGAAAACAGCTCGACAGAGACGTGCGCATCAGACAATTGAAGATGAAGATGAGCTGCTACGAGAATACCGCTTGTTGAAAAAATTAAAAAAAGGGACTATAGATGAGAATGAATATGCTAAGTTAACCGGCACTGAGGAATTACTTTGA 2037 0.4207 MTIRKGNEQVELVGSVESAXIYLTYLSLSVLNSPAKSRIKSIYLRSSQGRIGAPERTKITQKATAPPTLTPPTRYEEQNQCDTAESCEAMDSDFPNKALTSTRFSEMNPPLSEPVLQALSEFGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSNPKPHQVLGIIISPTRELSSQIYHVAQPFIKTLVNVESMLLVGGVDVKADMKKIEEGGVNILIGTPGRLYDIMDRMDVLDFKNLEILILDEADRLLDMGFQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKPVNDPAVSQQLASSKTPSGLHIEYLECEADKKPSQLVDIIMKNRSRKMIIYFMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQAAREKALASFTSLSNGFLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGRQGHAIVFLLPKEESYVEFLRIRRVPLQERSCSNDASDIVPQIRSIAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSISEVKQQSLSTKGFVPVEDINLKDIKYRDKSREKQRKKNLQTKKEAKEKETKPQKPNKTPNADIITRKKTARQRRAHQTIEDEDELLREYRLLKKLKKGTIDENEYAKLTGTEELL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1536 678 SMART DUF4217_3 502 565 IPR025313 -
Glsi10g1536 678 MobiDBLite consensus disorder prediction 593 642 - -
Glsi10g1536 678 FunFam RNA helicase 98 316 - -
Glsi10g1536 678 Coils Coil 592 614 - -
Glsi10g1536 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 483 IPR027417 -
Glsi10g1536 678 Pfam Domain of unknown function (DUF4217) 505 563 IPR025313 -
Glsi10g1536 678 PANTHER RNA HELICASE 85 605 - -
Glsi10g1536 678 MobiDBLite consensus disorder prediction 593 618 - -
Glsi10g1536 678 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Glsi10g1536 678 CDD DEADc_DDX55 115 313 - -
Glsi10g1536 678 SMART helicmild6 379 464 IPR001650 -
Glsi10g1536 678 Pfam Helicase conserved C-terminal domain 352 464 IPR001650 -
Glsi10g1536 678 CDD SF2_C_DEAD 343 473 - -
Glsi10g1536 678 Gene3D - 72 316 IPR027417 -
Glsi10g1536 678 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 511 IPR001650 -
Glsi10g1536 678 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Glsi10g1536 678 Pfam DEAD/DEAH box helicase 128 302 IPR011545 GO:0003676|GO:0005524
Glsi10g1536 678 MobiDBLite consensus disorder prediction 627 642 - -
Glsi10g1536 678 SMART ultradead3 123 323 IPR014001 -
Glsi10g1536 678 Gene3D - 343 576 IPR027417 -
Glsi10g1536 678 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 313 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1536 Glsi-ChrGlsi10 10300404 10307490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1536 85 478 Eukaryotic Initiation Factors Gene Family AT3G13920 29.873 2.39e-45 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1536 10 10300404 10307490 Glsi10g1536 10 10300404 10307490 ECH