Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1533 ATGGCTGCGTGTTACAACTTAAGGTCTGGGACATTGAAATCCTTTGAGGCATTCCTCTTTGGCTCTTGGCAAGCTGTGGAGCTCATAAAAGTTGAGGCAGGAACTGTGATAATACATTTTATTAATAAGCACTATATGGTTCTGGAGAAAGGCCCCTTTTCAGACGTTCGGATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCTGCTTTTTAAGATCTGGAATAGACGTATGTGTGCTATCAGCTTCTCAACAGGCTGATAATTCAGATGAAATTAGTCTTCAGCCTGTTTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATGAATCTGAGTGCTCGTGTCAGTATTTTGTGAACTTCTATGTTAATCAAGGTTCTTTTGATCCAGAGATAAGAACTCTTAATAAGGAGATTAAAGTAGTTGGAATAAATCAAATTTCCATCCTCCAAAAGCTTGAACGCAATCCTTGTGAAGATCAACATTATCGGTGGGATTCATCTGAGGACTGCTTTGCAGTACCACAGACTAAATTGCTTGTAGGAAGATTTTTATCTGATCTTTCATGGTTAGTTGTTGCATCAGTTTTAAAGCAGGTTTCGTTCTGTGTAAGATCTATAGAAAACAATATTGTGTATCAAATTTTGGGAGGTGATAATTGTTACTCTTCGTTGATCTCTGACTCTCATAAACATGCTGTAAACTTCAGAGTTGATAATCGCATGTTAGTACCAATTGTTGCTCAAGTTGTTCAATCTGATAGCAATAGGGTAGGCCATGCACATGACGCCTGTGAAGATGAGGTGTCACTAGTTGCTACTCTTGAGGGCTTACGACGTTCCAAACGTCGTAATGTACAACCCGAACGTTACATTGGTTATGATGATGTCTCTGAGTTGGATGTTGGTTATGTTCGAACCAGGCCATACAGGATAAACACAAGAAAAGATGATGAACAGTCACCACCAATACCATGCCTGTCTGGCTTACAAGAAAATTGTCCAGAAGAAGACATTCCCGTTTGTCCAAAAGTTGATAAGAGGGCTAAACCTGGTGAGGTAAAGTCGGATGATGTTGATAAAAAAGATGATGAACAGTCACCACCAATACCATGCCTGTCTGGCTTACAAGAAAATTGTCCAGAAGAAGACATTCCCATTTGTCCAAAAGTTGATAAGAGGGCTAAACCTGGGGAGGTAAAGTCAGATGATGTTGATAAAAAAGAACATCAAACTCAACTTACTTTTGTTCCTCTGCCTGATGAAGGCAATCCAATAGCCCTTGACCATTACCACATCAATGCCAAAGTTACTAAAAATTCTGCACATGAAAATTGTGAAATTTCTTCCAAATATTATCATCTGATTGATAGCCCTAAACTGAAGAGGGCAAATATTGATCTGGTAACTTCAGAACCCTGTGATCATTCTGCAAAGATTCCTGATGTTGAAAATTCTGTAGAAGAGATTAATGATAAATCTTCTAGATGTTATTATAGTTATGGCACCCCTAAAGTGCAGAGGAAGAATTTATTTGATCAGGAAAATATGGATCTTGAAAGTACATGGGAAGGGTTACATTGTAATAAAGGAATTCAAGGGGCAAAAAATAATTCAACGTCTTCAAGTAGTAGAAGTCTTGGGGAAGAAAGAACTTATAAAGACAGATCCTTAAGTCCAGGTGCCTATAAGGAATTGATAGATTCATACTTAAAGAATATTATTACAACACCAACAACAGAGGAGTCACCTACTACTGACCAGTGGAAACAATTCAAGGCAACAACCAACTTTGGGCAAAAGAAGGAAACAGAGAAATCCCAAAGAGAGGCTGAGGGAGAAATATCAGAAATTGATATGTTGTGGAGAGAAATGGAAGTCTCGTTGGCATCGACCCATCTTCTTGAAGACACGGAGGGTTCAAAAGCTGCAGTATTTGCTGAGACTCTGGAAAATAATAACAAACTTTGTCAACACGAGTTTAGATTGAATGAAGAAATTGGAATTTACTGCTGTAAATGTGGCTTTGTGAGCACCGAGATAAAAGATGTTTCACCACCATTTATGCAATACTCAGGGTGGCAGCAAGAGGAAAAGCAGTGCAGTGCAGAATATTCAGAGGAAAAGGCTGATGAAGATGATGGTTTACATCCTTTTGCAACTCATGCTTCTCCTGATAAACCTATCTCTGAAGAACATGATCATGTCTGGAAACTGATTCCCGAACTTAGTAGGAAGTTGCATGTCCACCAAAAAAAAGCTTTTGAATTTCTGTGGCAAAATATTGCAGGATCTGTGGAACCGGCACTTATGGAAGCTAAATCTGAAAGAAGAGGCGGCTGCGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTAATTATTTCATTTCTTGTTAGCTACTTGAAGTTGTTCCCTGGGAAGAGACCTTTGGTACTTGCTCCAAAGACAACACTTTATACTTGGTATAAAGAATTTATCAAGTGGGAAATTCCTATACCAGTGTATCTGATTCATGGTCGTAAAACCTACAGAGTATTCAAGCAGGAATCAATGGTTTTTCCTGTTATTCCAAAGCCCACTGAAGATGCCAAGCATGTTTTGGATTGTCTTGAAAAGATACAGAAGTGGCATGCGCATCCAAGTATTCTGGTCATGGGTTATTCTTCCTTTTCAGCATTGATGCAAGAGGGTTCAAAGTTTGCACACAGAAAGTTTATGGCTAAAGTTTTGAGGAAAAGTCCAGGGATTCTGATACTGGATGAAGGGCACAATCCTAGAAGTACAGGATCAAGGTTGAGGAAAGTTTTGATGAAAGTAGAGACAGAATTGAGAATACTACTTTCGGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGGCCAAAGTTTGTCCATGAAGTGTTGAAAGAATTAGGCCCAAAATACAAGAGAAAAAAGAAAGGAGCAGAAAAAGCACTCAACTTAATAGAATCACGAGCAAGGAAATTCTTCTTAGATAAAATTGCAAAAAAAATTGACTCAAATATTGATTATGAGAGGATGCAGGGTCTAAACATGTTGAGAAATATCACAAATGGTTTTATAGATGTTTATGAAGGTGGAAGTTCTGACAGTCTTCCTGGTTTGCAAATTTATACATTGTTAATGAATATGACTGATATGCAACACGAGATTTTGCAGGGATTCCAAAACAAAGTGGCTGAGCGCAATGGATATCCTCTCGAGTTAGAGCTTTTGATAACCCTTGGTTCTATACATCCCTGGTTAATCAAAACAACTGCATGCGCTGATAAGTTTCTCACTGTGGAGCAACTGAGGGAGCTAGAAAAAAGCAAGTTTGATTTAAAGAAAGGATCAAAAGTACGATTTGTTCTGGACCTTGTCTACCGCATTGTCAATAAGGAGAAGATTCTTATCTTTTGCCACCACATTGCACCTGTGAAATTATTTGTGGAGCTATTTGAGAAGTTCTTTGGGTGGCAAAAAGGTCGAGAAGTTTTGGTGCTTACTGGGGAACTAGAGCTCTTTGAACGGGGTACAGTGATGGATAAGTTTGAGGAGGTTGGTGGAGCAGCAAAGATACTCCTTGCCTCAATTACAGCTTGCGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGGTTGATTTTGTTGGACTCAGAGTGGAATCCATCAAAGACAAAGCAGGCTATTGCTCGTGCCTTTCGTCCTGGTCAGCAAAGGATGGTTTATGTGTATCAGCTGTTGGTGACAGGCACCCTGGAGGAAGATAAGTATCGCAGAACCACTTGGAAGGAGTGGGTTTCAAGCATGATTTTTAGTGAGGCTTTTGTGGAAGATCCTTCCCGATGGCAAGCCGAGAAGATTGAAGATGATATACTTCGGGAGATGATTGAGGAAGACCGGTCTAAAATGTTCCATATGATCATGAAAAATGAAAAGGCTTCAATCAACTGA 3990 0.3942 MAACYNLRSGTLKSFEAFLFGSWQAVELIKVEAGTVIIHFINKHYMVLEKGPFSDVRIRSRKATLSDCSCFLRSGIDVCVLSASQQADNSDEISLQPVWADARISSIQRKPHESECSCQYFVNFYVNQGSFDPEIRTLNKEIKVVGINQISILQKLERNPCEDQHYRWDSSEDCFAVPQTKLLVGRFLSDLSWLVVASVLKQVSFCVRSIENNIVYQILGGDNCYSSLISDSHKHAVNFRVDNRMLVPIVAQVVQSDSNRVGHAHDACEDEVSLVATLEGLRRSKRRNVQPERYIGYDDVSELDVGYVRTRPYRINTRKDDEQSPPIPCLSGLQENCPEEDIPVCPKVDKRAKPGEVKSDDVDKKDDEQSPPIPCLSGLQENCPEEDIPICPKVDKRAKPGEVKSDDVDKKEHQTQLTFVPLPDEGNPIALDHYHINAKVTKNSAHENCEISSKYYHLIDSPKLKRANIDLVTSEPCDHSAKIPDVENSVEEINDKSSRCYYSYGTPKVQRKNLFDQENMDLESTWEGLHCNKGIQGAKNNSTSSSSRSLGEERTYKDRSLSPGAYKELIDSYLKNIITTPTTEESPTTDQWKQFKATTNFGQKKETEKSQREAEGEISEIDMLWREMEVSLASTHLLEDTEGSKAAVFAETLENNNKLCQHEFRLNEEIGIYCCKCGFVSTEIKDVSPPFMQYSGWQQEEKQCSAEYSEEKADEDDGLHPFATHASPDKPISEEHDHVWKLIPELSRKLHVHQKKAFEFLWQNIAGSVEPALMEAKSERRGGCVISHSPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRKTYRVFKQESMVFPVIPKPTEDAKHVLDCLEKIQKWHAHPSILVMGYSSFSALMQEGSKFAHRKFMAKVLRKSPGILILDEGHNPRSTGSRLRKVLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLKELGPKYKRKKKGAEKALNLIESRARKFFLDKIAKKIDSNIDYERMQGLNMLRNITNGFIDVYEGGSSDSLPGLQIYTLLMNMTDMQHEILQGFQNKVAERNGYPLELELLITLGSIHPWLIKTTACADKFLTVEQLRELEKSKFDLKKGSKVRFVLDLVYRIVNKEKILIFCHHIAPVKLFVELFEKFFGWQKGREVLVLTGELELFERGTVMDKFEEVGGAAKILLASITACAEGISLTAASRLILLDSEWNPSKTKQAIARAFRPGQQRMVYVYQLLVTGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMIEEDRSKMFHMIMKNEKASIN 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1533 1329 MobiDBLite consensus disorder prediction 342 370 - -
Glsi10g1533 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 775 974 IPR014001 -
Glsi10g1533 1329 Gene3D - 1052 1328 IPR027417 -
Glsi10g1533 1329 MobiDBLite consensus disorder prediction 533 558 - -
Glsi10g1533 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1136 1320 IPR001650 -
Glsi10g1533 1329 Pfam SNF2-related domain 747 1030 IPR000330 GO:0005524|GO:0140658
Glsi10g1533 1329 SMART helicmild6 1160 1249 IPR001650 -
Glsi10g1533 1329 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 49 1327 IPR044567 GO:0080188
Glsi10g1533 1329 SMART ultradead3 746 979 IPR014001 -
Glsi10g1533 1329 Pfam Helicase conserved C-terminal domain 1132 1248 IPR001650 -
Glsi10g1533 1329 CDD SF2_C_SNF 1123 1260 - -
Glsi10g1533 1329 Gene3D - 724 1016 IPR038718 -
Glsi10g1533 1329 CDD DEXHc_ATRX-like 750 996 - -
Glsi10g1533 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 976 IPR027417 -
Glsi10g1533 1329 MobiDBLite consensus disorder prediction 535 550 - -
Glsi10g1533 1329 MobiDBLite consensus disorder prediction 341 381 - -
Glsi10g1533 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1317 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1533 Glsi-ChrGlsi10 10279921 10285444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1533 1128 1267 RAD5 or RAD16-like Gene Family AT5G43530 35.664 3.34e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi10g1533 SNF2_N 9.4e-17 CL0023