Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1480 ATGACATCTAGAAATAAGCATAGACTACTTGAAGATATAGCTAAACGGTTGAAGAATGCATGTGCCAAGTGGGACCGTAGATTATGCAGTTGCACCAAAGCTCTCATATCTCTAAGCACTAGCTACTACACAATGGCCATTGCAGCATTCTCTGCTTTCTCTCTTTTCTTCCTTCTTCTTAACCTTGAAGGCACTAACGGTGACAATGGAGGATGGCAAGGTGGTCATGCCACATTCTATGGTGGGGGTGACGCATCTGGGACAATGGGGGGAGCATGTGGGTATGGCAATTTGTACAGCCAAGGTTATGGGACTAACACTGCAGCACTAAGCACTGCTTTGTTCAACAGTGGCCTGAGCTGCGGGTCTTGTTATGAGATGCGTTGCAATGGTGACCCTAAATGGTGCCTCCCTGCTACCATCACCGTCACTGCCACAAACTTCTGTCCCCCTAACTACGCTTTGTCTAACGACAATGGTGGCTGGTGTAACCCTCCTCTGCAGCACTTTGATCTGGCTGAGCCTGCTTTCTTGCAGATTGCTCAATACAAAGCTGGGATTGTTCCAGTTTCCTTCAGAAGAGTCCCCTGTGTCAAGAAGGGAGGAATTAGATTCACCATCAATGGCCACTCTTACTTCAACTTGGTTCTGATCTCAAATGTTGGTGGAGCTGGAGATATTCATTCTGTGTCAATCAAAGGGTCTAGAACTGGGTGGCAGCCCATGTCAAGGAACTGGGGCCAGAATTGGCAGAGCAACTCATACCTCAATGGCCAGAGCCTCTCCTTCCAAGTCACAACAAGTGATGGCAGAACCATCACTAGCAACAATGCTGCGCCAGCCAATTGGCAATTTGGGCAGACATTTGAGGGCGGACAATTTTAG 885 0.4802 MTSRNKHRLLEDIAKRLKNACAKWDRRLCSCTKALISLSTSYYTMAIAAFSAFSLFFLLLNLEGTNGDNGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMRCNGDPKWCLPATITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLISNVGGAGDIHSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSNNAAPANWQFGQTFEGGQF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1480 294 Pfam Expansin C-terminal domain 203 280 IPR007117 -
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 71 86 IPR007118 GO:0005576
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 277 291 IPR007118 GO:0005576
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 111 129 IPR007118 GO:0005576
Glsi10g1480 294 PRINTS Expansin/Lol pI family signature 185 201 IPR007118 GO:0005576
Glsi10g1480 294 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 90 202 IPR007112 -
Glsi10g1480 294 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 212 291 IPR007117 -
Glsi10g1480 294 Gene3D - 61 197 IPR036908 -
Glsi10g1480 294 Pfam Lytic transglycolase 107 192 IPR009009 -
Glsi10g1480 294 CDD DPBB_EXPA_N 71 197 - -
Glsi10g1480 294 PRINTS Expansin signature 277 293 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 201 213 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 129 140 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 248 269 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 102 116 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 160 177 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 141 151 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 177 190 IPR002963 GO:0009664
Glsi10g1480 294 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Glsi10g1480 294 PANTHER EXPANSIN-A15 53 294 IPR002963 GO:0009664
Glsi10g1480 294 Gene3D - 202 294 IPR036749 -
Glsi10g1480 294 FunFam Expansin 62 198 - -
Glsi10g1480 294 SUPERFAMILY PHL pollen allergen 199 291 IPR036749 -
Glsi10g1480 294 FunFam Expansin 202 294 - -
Glsi10g1480 294 SMART dpbb_1 107 192 IPR007112 -
Glsi10g1480 294 SUPERFAMILY Barwin-like endoglucanases 71 220 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1480 Glsi-ChrGlsi10 9944678 9946017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1480 43 294 Expansin Gene Family AT2G40610 81.818 5.12e-156 434