Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1478 ATGGCTCTTTATCACCGTCCTCACCGCCTGCTTCTTGGCACAGATTCAAGTTCAACCGTACCAGGTAATGTAAACAGGACAAGGGGGTCTTATACAAGTGATGCCAATTTTGACACAAACATGGTGATTATCTTAGCAGCCTTGCTTTGTGCACTAATATGTGCTCTGGGGCTCAATTCAATTGTGCGCTGCGCTCTAAGATGCAGCCGTAGGTTTGCTTTTGAGACCCCAGATGAGGCAGCAGCTCGTTTAGCAGCAAAAGGGTTGAAGAAGAGTGCATTGCGTCAGATCCCTATAGCTGCTTATGGTTCAGGTACTAATATTCCGGCCACTGAGTGTCCAATTTGCCTTGGGGAGTTCATGGATGGGGAGAAAGTGAGAGTGCTTCCTAAATGTAACCATGGGTTCCATGTAAGGTGCATAGACACATGGCTGCTCTCACACTCCTCTTGCCCTACTTGCAGACAGTCTTTGCTAGAGCAGTCAACCATTTCAGAAGCAGCTGCTGCTGTATCTGCAGCTGCTGATGCAGGAGCCAGGCACCCCGTGGAGAATGCCTCAGGAAGAAACGAAAGTGGAGATGTAGCTGTAGCTGTGGATGAGGTTGGCTGA 612 0.4902 MALYHRPHRLLLGTDSSSTVPGNVNRTRGSYTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPDEAAARLAAKGLKKSALRQIPIAAYGSGTNIPATECPICLGEFMDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLEQSTISEAAAAVSAAADAGARHPVENASGRNESGDVAVAVDEVG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1478 203 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Glsi10g1478 203 CDD RING-H2_EL5-like 112 155 - -
Glsi10g1478 203 MobiDBLite consensus disorder prediction 181 203 - -
Glsi10g1478 203 PANTHER RING-H2 FINGER PROTEIN ATL78 28 166 IPR044602 GO:0016567|GO:0016740
Glsi10g1478 203 SMART ring_2 113 154 IPR001841 -
Glsi10g1478 203 FunFam RING-H2 finger protein ATL72-like 80 159 - -
Glsi10g1478 203 SMART FANCL_C_2 109 167 - -
Glsi10g1478 203 Pfam Ring finger domain 112 155 IPR001841 -
Glsi10g1478 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
Glsi10g1478 203 SUPERFAMILY RING/U-box 94 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1478 Glsi-ChrGlsi10 9931295 9931906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1478 9 159 C3H Transcription Factor Family AT3G10910 63.750 5.02e-62 189