Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1474 ATGTCGTCGGAAGAGATTGGTCTCGTTCCTGATCAGAGGATCGATAACGGTCTCAACTCGCCCCTAGTTTTCCAACACGACTCCTTGCGTTTCAGCTGCGATGCTCCCCAGCGTCGAGTCGGAGACCCGGGTCCGAAAACGAGGGAACTCGGCGGTTTCATCGATGAAAAGATGTTCGCCGTGGAGCGTGACCGTTTTTTCACGTCACATGGAGTGGAGTTCCGTCGGAATGTTTATGGGGATTGCTCGGACCGGCGGAACCCTCCGGATGGCCGGAATTGGAATGGGAGCGGGAGCACTGCAACTCCAAGTGGCGATGAATCGGACGGTGAAGATGATGAAGATAATGAGGAAGATGACGATGATGACGATGTTGAGGGTGACACTGAAGTAGAAGGACTAGTTGGTGTTAACGATGGGAGCAAAGGGAATTCCAATTCAATCAACGACATTAACAATAACATCAATGTTAGTGACCTGGCTAGTGTTGCAGAGAGAATGTCAAACGGTAAAGCTCAGCATCATTTGTCCTATGGATCCGAGGTATTGGGGAAGGAGGGAGAAATTGGCCAGTTGGCGCATAATAATACGAGGGGTACCGATGAAGATCATCAGCAAGAAAGGTTAGATAAATCCCAAAGTGCGGTCACGATTGCTGAAACTGACTGTGAGGAGTACTATTCACACTATCTTCAAGGCACGGGGGGGTCAGCTTCTGTGCAGAAAGCTATGGCGGGGGAGAATGGTTGCGGGTTTAGTGGAAGGAAGGACGTTATCTATTCAAGCGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACGGGAGCTCTTATGGACGATGCAATGATATTGCCTTGTGGGCATTCCTTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGTTCTCAACCCATATCTGAGGAGTCAATATCACCAAATCTATCACTTCGAGTTGCTGTGCAGGCATACCGTCGGGAAGAGGAGTCACAGTTTTACCGCTCCTCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTATGGTGATTCTGCAGTTATGGAACCACCGAGGGGTAGAGGTGTTCAATTTCCATTTGCGGTGACGGACCGGGTTATTATAAAGGGGAACAAGAGGACACCACAGCGTTTTGTTGGACGTGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGATAATGCTGAGAGTGTAAAATTGCAGTATCGCTCACTTGCTAAGGTTTCAGATGACCCTTCAAAACCTGCCTCCAGCAAGGTGGGACCTAATTGGCTTTAA 1341 0.4802 MSSEEIGLVPDQRIDNGLNSPLVFQHDSLRFSCDAPQRRVGDPGPKTRELGGFIDEKMFAVERDRFFTSHGVEFRRNVYGDCSDRRNPPDGRNWNGSGSTATPSGDESDGEDDEDNEEDDDDDDVEGDTEVEGLVGVNDGSKGNSNSINDINNNINVSDLASVAERMSNGKAQHHLSYGSEVLGKEGEIGQLAHNNTRGTDEDHQQERLDKSQSAVTIAETDCEEYYSHYLQGTGGSASVQKAMAGENGCGFSGRKDVIYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPISEESISPNLSLRVAVQAYRREEESQFYRSSKRRRERFDQGGYGDSAVMEPPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKVGPNWL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1474 446 MobiDBLite consensus disorder prediction 106 130 - -
Glsi10g1474 446 MobiDBLite consensus disorder prediction 79 153 - -
Glsi10g1474 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 337 IPR013083 -
Glsi10g1474 446 MobiDBLite consensus disorder prediction 339 354 - -
Glsi10g1474 446 ProSiteProfiles U-box domain profile. 267 339 IPR003613 GO:0004842|GO:0016567
Glsi10g1474 446 MobiDBLite consensus disorder prediction 139 153 - -
Glsi10g1474 446 MobiDBLite consensus disorder prediction 90 105 - -
Glsi10g1474 446 MobiDBLite consensus disorder prediction 339 362 - -
Glsi10g1474 446 SUPERFAMILY RING/U-box 266 338 - -
Glsi10g1474 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 3 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1474 Glsi-ChrGlsi10 9911922 9916180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1474 212 446 Plant U-box Gene Family AT5G05230 60.331 3.07e-91 279