Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1472 ATGCGAGCATTGTTGAACATGAGAGCTATTCTCTGCTTGTTCTTGTTGCTTCTTATAGATCCAGTGTTCGTGGTGATTTCGGTAAATCCATCTCTCAATGACGACGTTTTGGGGCTGATAGTATTTAAAGCTGATATACAAGATCCAAAGGGGAAACTGGTAAGTTGGAATGAAGATGATGAGAATCCCTGTGGCTGGTCCGGTGTGAAATGTAGCTCTAGATCCAACAGAGTCATTGAGCTTAACCTTGATGGGTTCTCTCTTTCGGGTCGGATACGTCGAGGCCTCCTCCAGTTGCAATTTTTACGCAAGCTTTCTCTCGCCAAGAACAATCTCACGGGCAGCATAAGTCCCAATATTGCTCGGCTCGACAACCTTCGAGTGATAGATTTGAGTGAGAATAATCTCTCAGGAGAGCTACCCGACGATCTTTTCCGACAATGCGGGTCTCTAAGGGCAGTTTCATTGGCGAAGAACAAGTTTACAGGGAAGATACCGTCTAGTTTGAGCTCATGCTCAGCTCTTGCTGCAATTAACCTCTCGTTTAACCAGTTTTCGGGTTCTCTTCCTTCTGGTATTTGGACTTTGAGTGGACTTAGGTCACTAGATTTGTCGGATAATTTGTTGGAAGGTGAAATTCCAAAGGAAATTGAAGGATTGAAGAATTTGCGAACAATTAACTTGGCCAAAAATCAGTTTTCAGGGAATGTCCCGGATGGGTTTGGAAGCTGCTTACTTTTAAGGTCTATTGATCTCAGTGAGAATTCTCTTTCCGGTAGCCTGCCAGGGGATATGCAGGAGCTCACATTGTGTAATTACCTTAGTGTAAGTGGAAATGCTTTTTCAGGCGAGATTTCCGCGTGGATTGGGGAAATGAAAAGCCTGGAAACATTGGATATCTCTCTTAATAGATTTTCAGGTTCGGTGCCAAGTTCTATAGGAAATCTTCAGTCGTTGAAGATAATGAATTTTTCTGCAAATGGTTTTTCCGGTAATCTGCCTGAGTCTATGATAAATTGCACAAACCTTTTAGCCTTAGACGTCAGCCAGAATTCAATGTCAGGTGATCTTCCATCATGGATTTTCAAGTCAGATTTGCAGAAGGTTTTGGTTTCAGAAAAGAAATGGCGTGGAAGCCTGAAAAATCCTCTATATTCCTTGGAAAAAGTTGCCGTTCAAAGTCTTCAACTTTTGGATCTATCTGAAAATGCATTTTCTGGTGAAATTACATCTGCTATTTCAGTTTTAAGCAGCTTGAAGCTCTTGAATTTATCAAAGAACACTCTAAGTGGACCTATACCGGCTGCCATTGGAGAATTAAAGTCGCTGTATAGTCTTGATTTTAGTGAGAATCAGCTAAATGGAAGCATACCTTTGGATATAGGAGGAGCTGTATCTTTGAAAGAATTGAGATTGGGGAACAACTCTCTAGTGGGGAAAATTCCAACCTCAATTGGCAACTGCTCTTCATTGTCCACTTTAATTCTATCACAAAACAGTCTGGATGGAACGATACCTGCAGCAATTGCAAAACTGACTAATCTACAAGTTGTGGATTTATCGTTTAACAACCTTACTGGAAACCTTCCCAAGCAATTGGCCAATCTGCCCAACCTTCTTTTCTTCAATATATCCCACAACAACCTCCAGGGTGAACTGCCGGCTGGTGCCTTTTTCAATACCATTTCACCGTCCTCTCTTACTGGCAATCCATCTCTTTGCGGAGCTGCTGTCAATAAATCATGCCCTACTGTCCTTCCAAAGCCAATTGTTCTGAATCCGAACACTTCTACTGATTCTGCCTCGGGTTCACTACCACCGAATTTGGGCCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGCGATCACTGTTCTCAATCTCCGTGTCCGGTCCTCTGCATCTCGATCTGCAGCTGCCCTCACATTTTCTGCCGGAGAAGAATTCAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAGCTTGTAATGTTTTCAGGTGAACCTGACTTCAGCACTGGAGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGTGGATTTGGGGCAGTGTACCGAACAGTTCTTAAAGATGGCCATTCAGTTGCAATCAAGAAGCTCACTGTATCAAGTCTTGTCAAGTCCCAGGAAGATTTTGAAAGAGAAGTGAAGAAACTGGGAAAAGCCAGACACCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACCCCATCCCTACAGCTCCTCATATATGAGTTCGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGATGGATCAGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATCTAGTTCTCGGGACTGCAAAAGCCTTGGCTCATTTGCACCACATGAACATTATTCACTACAACATTAAGTCAACCAATGTCCTAATTGATAGCTATGGTGAAGCTAAAGTAGGAGACTTTGGCCTTGCAAGATTGTTACCAATGCTTGATCGTTATGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCACCAGAGTTTGCCTGCCGGACAGTGAAGATAACAGAGAAATGCGATGTGTATGGGTTTGGAGTTTTGGTTTTGGAAGTGGTCACAGGGAAGAGGCCGGTTGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTCAGAGGAGCTTTGGAAGAAGGCAGGGTGGAGGAATGTATTGATGGGAGGCTCCAGGGGAAGTTCCCAGCTGAAGAAGCAATTCCTGTGATGAAGCTAGGTTTAATATGTACTTCACAAGTGCCTTCCAATCGGCCAGACATGGGAGAGGTAGTTAATATATTGGAGCTGATAAGATGTCCCTCAGAAGGACAAGAGGAGCTGCTGGGATAA 2934 0.4346 MRALLNMRAILCLFLLLLIDPVFVVISVNPSLNDDVLGLIVFKADIQDPKGKLVSWNEDDENPCGWSGVKCSSRSNRVIELNLDGFSLSGRIRRGLLQLQFLRKLSLAKNNLTGSISPNIARLDNLRVIDLSENNLSGELPDDLFRQCGSLRAVSLAKNKFTGKIPSSLSSCSALAAINLSFNQFSGSLPSGIWTLSGLRSLDLSDNLLEGEIPKEIEGLKNLRTINLAKNQFSGNVPDGFGSCLLLRSIDLSENSLSGSLPGDMQELTLCNYLSVSGNAFSGEISAWIGEMKSLETLDISLNRFSGSVPSSIGNLQSLKIMNFSANGFSGNLPESMINCTNLLALDVSQNSMSGDLPSWIFKSDLQKVLVSEKKWRGSLKNPLYSLEKVAVQSLQLLDLSENAFSGEITSAISVLSSLKLLNLSKNTLSGPIPAAIGELKSLYSLDFSENQLNGSIPLDIGGAVSLKELRLGNNSLVGKIPTSIGNCSSLSTLILSQNSLDGTIPAAIAKLTNLQVVDLSFNNLTGNLPKQLANLPNLLFFNISHNNLQGELPAGAFFNTISPSSLTGNPSLCGAAVNKSCPTVLPKPIVLNPNTSTDSASGSLPPNLGHKRIILSISALIAIGAAAVIVIGVIAITVLNLRVRSSASRSAAALTFSAGEEFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYRTVLKDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKARHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHDGSGGNFLSWNERFNLVLGTAKALAHLHHMNIIHYNIKSTNVLIDSYGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELLG 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1472 977 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Glsi10g1472 977 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Glsi10g1472 977 Gene3D Transferase(Phosphotransferase) domain 1 770 974 - -
Glsi10g1472 977 ProSiteProfiles Protein kinase domain profile. 693 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1472 977 SUPERFAMILY Protein kinase-like (PK-like) 697 961 IPR011009 -
Glsi10g1472 977 SUPERFAMILY L domain-like 50 369 - -
Glsi10g1472 977 PRINTS Leucine-rich repeat signature 247 260 - -
Glsi10g1472 977 PRINTS Leucine-rich repeat signature 512 525 - -
Glsi10g1472 977 SMART LRR_typ_2 440 464 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 536 560 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 123 147 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 196 219 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 220 244 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 292 316 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 384 407 IPR003591 -
Glsi10g1472 977 SMART LRR_typ_2 512 535 IPR003591 -
Glsi10g1472 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 687 769 - -
Glsi10g1472 977 Pfam Protein tyrosine and serine/threonine kinase 695 961 IPR001245 GO:0004672|GO:0006468
Glsi10g1472 977 Pfam Leucine Rich Repeat 199 220 IPR001611 GO:0005515
Glsi10g1472 977 CDD STKc_IRAK 699 965 - -
Glsi10g1472 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 770 971 - -
Glsi10g1472 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 311 - -
Glsi10g1472 977 Gene3D Phosphorylase Kinase; domain 1 686 769 - -
Glsi10g1472 977 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Glsi10g1472 977 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Glsi10g1472 977 Gene3D Ribonuclease Inhibitor 313 586 IPR032675 -
Glsi10g1472 977 SMART LRR_sd22_2 512 538 - -
Glsi10g1472 977 SMART LRR_sd22_2 292 318 - -
Glsi10g1472 977 SMART LRR_sd22_2 196 222 - -
Glsi10g1472 977 SUPERFAMILY RNI-like 264 573 - -
Glsi10g1472 977 Gene3D Ribonuclease Inhibitor 193 246 IPR032675 -
Glsi10g1472 977 Gene3D Ribonuclease Inhibitor 247 312 IPR032675 -
Glsi10g1472 977 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Glsi10g1472 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 272 359 - -
Glsi10g1472 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 312 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1472 Glsi-ChrGlsi10 9883019 9886545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1472 13 975 Receptor kinase-like Gene Family AT3G56370 69.804 0.0 1307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Glsi10g1472 PK_Tyr_Ser-Thr 2.2e-41 CL0016