LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1466	ATGGACGAGGCCATTAATTCTTTGATTCACAGAGCTTGCGAATTAGCTAGAAACCTTGAAGCAAACCTACCCAACTTGGCCAGCCAGCCAGATATCATATCCATGTCTATTGATGAGATAGTGCAGACATTTAATGCTGCCAAAGAAAGGCTTTTCTCCCAAGGTGCTCACATAATGGTACCTGACGATGAAACTTTCAAGCAGGAAACACATGAGCTTCAGATTGGTTCGTCTTCATTGCAGGAATGGCTAAGGTCTAGTTATCCACTACGATCGATGGATGAGTTGATTCAAATGCAGCAACTTCAACCTGCAAGGAGCATGCCACCGTCTGATATGCAGTTAACGAGGTCTAGGAGAGACGTGGAAGGTTCTGCTGAGAGATCAAAGGGATCAGAAGAAGCATCTGCTTCACGACGGCGAACAAGGAAGGATGATCCAGAGAAGACGACAATGATGGTTCCTGCACCGCAGTTTGGAAACACAGAGGTGCCACCAGAGGATGGCTACACGTGGAGAAAATATGGTCAGAAAGAGATACTTGGCTCCAACTACCCAAGGAGTTACTACCGGTGCACCCATCAGAAATTATATAAATGCCCAGCCAAGAAGCAAGTGCAGCGTCATGATCAAGATCCTAAAATATTTGCAATAACATATAGAGGTAAACACATTTGCCATATGTCATCCACTGCTCCATCATCATCAGTTCCGCCACAACTACTTCCACTGGATATCTCACAGGACATCGCCCAAAGTACCACTTCCTCCCAATTGTCTCCATCTTCAACTTCAGCTTCCGGGTGGCTATCTTCAGTCCACCTCGGCCTGCTCGGTCTCGGCGGAGGTGGCATGGCTCCAGCCAGTGCGGATGCCGGTGGTGCAGGCCCCTCCACATCAAGGCTTGGTGGTGCTGATTATCCGGTAGCAGATATGGCTGATGCCATGTTTAATTCAGGATCTAGCAGTGGTAATAGTATGGAGTCTCTATTTCCTCTCAATGAAGATAAATGGGAAACGGGAGACAAGAAAAACTGA	1038	0.4711	MDEAINSLIHRACELARNLEANLPNLASQPDIISMSIDEIVQTFNAAKERLFSQGAHIMVPDDETFKQETHELQIGSSSLQEWLRSSYPLRSMDELIQMQQLQPARSMPPSDMQLTRSRRDVEGSAERSKGSEEASASRRRTRKDDPEKTTMMVPAPQFGNTEVPPEDGYTWRKYGQKEILGSNYPRSYYRCTHQKLYKCPAKKQVQRHDQDPKIFAITYRGKHICHMSSTAPSSSVPPQLLPLDISQDIAQSTTSSQLSPSSTSASGWLSSVHLGLLGLGGGGMAPASADAGGAGPSTSRLGGADYPVADMADAMFNSGSSSGNSMESLFPLNEDKWETGDKKN	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1466	345	MobiDBLite	consensus disorder prediction	318	345	-	-
	Glsi10g1466	345	ProSiteProfiles	WRKY domain profile.	167	224	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g1466	345	SMART	WRKY_cls	166	228	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g1466	345	SUPERFAMILY	WRKY DNA-binding domain	163	228	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g1466	345	Pfam	WRKY DNA -binding domain	167	226	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g1466	345	Gene3D	WRKY domain	156	229	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g1466	345	MobiDBLite	consensus disorder prediction	102	165	-	-
	Glsi10g1466	345	MobiDBLite	consensus disorder prediction	116	150	-	-
	Glsi10g1466	345	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	44	264	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1466	Glsi-ChrGlsi10	9853868	9856095	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1466	3	335	WRKY Transcription Factor Family	AT2G40740	35.260	5.56e-55	180

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi10g1466		WRKY	6.2e-26	CL0274