Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g1463 | ATGGAGAAGGAGTTGGTCGAATTGTACGAAGCCGTAAAGAAGGCGGCGGACGCGGCGAGCTCTACCGATGGCGAACCTGAAGAAAGTCGATGCATTGAAGCGCTCGAGCAGCTTAAGAGATTCCCCGTCAATTATCAAATTCTTGTTTCTACCCAGGTGGGCAAACATCTTAAACATCTCACAAAACATCCAAGGAAGAAAATTCGGGTCTTTACTGCTGACCTGATTGAGATATGGAAAGGCATTATTGTTAAGGAAATAAGCAAGAATAAGAATGGGAGCTCAGATAATAATGTTGAGTCAGCAAATGGGGAGACAGCTAAAGCTGGGAAGGTTCAGAAGACACCTTCGTTGAAGTTTGAAAAGGTTATAAAGGCTGAAACCGTCAAGGTTGAGAAAGTTGTTAGTAATGGTACGTCAATCTCAAAAGATATAAAGAAAGTTCAGAGTGTGGGTATCAAAATTGAGAAAACTGATTCTGCTGCAAATGTTAAGGAGGAAAAGATTGCCAAGGACAAGAAGCAAGTTTCTGGAGTGAATAAAACGGTACCTAGCCCTGCTGCTTCCCCGAAGTTGAAGACTATGATTAAATCTAATGATATGATGCGAGACAAAATAAGGGACAATCTTCAACAGGCTTTCTCCAAGGTTCCGGGAGAGGCCGCCAATGAAGAATTCATTGATCAAGTTAATGCATGTGACCCTATTCGGGTTGCTGTTACAGTGGAGTCTGTATTATTTGAAAAGTGGGGTCCTTCTAATGGGGCCCAAAAGGTCAAGTATAGGTCCTTGCAGTTTAATTTGAAGGATCCAAGTAACCCAGATTTTCGGAGAAAAGTTCTAATTGGAGATATTGAGCCAGAGAAGCTGATCAACATGACCTCAGCAGAAATGGCTAGTGACCAAATGAAGGAGGAGATTGCAAAAATCGAGGAGAAAGCTTTAAATGATTGTCAGCTTGTAACCCAATTACAAGCCACAACTGATCAATTTAGGTGTAGTCGATGTGGTAAAAAGGAGACCACCTATTACCAAGTTCAGGTTCGCAGTGCTGATGAACCTATGACAACCTATGTCACATGCACAGATAATCAAATTCTGAAGCCTGGCAATTTACTTATTGTCTTGCAAGTCTAG | 1137 | 0.4178 | MEKELVELYEAVKKAADAASSTDGEPEESRCIEALEQLKRFPVNYQILVSTQVGKHLKHLTKHPRKKIRVFTADLIEIWKGIIVKEISKNKNGSSDNNVESANGETAKAGKVQKTPSLKFEKVIKAETVKVEKVVSNGTSISKDIKKVQSVGIKIEKTDSAANVKEEKIAKDKKQVSGVNKTVPSPAASPKLKTMIKSNDMMRDKIRDNLQQAFSKVPGEAANEEFIDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLQFNLKDPSNPDFRRKVLIGDIEPEKLINMTSAEMASDQMKEEIAKIEEKALNDCQLVTQLQATTDQFRCSRCGKKETTYYQVQVRSADEPMTTYVTCTDNQILKPGNLLIVLQV | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g1463 | 378 | Pfam | Transcription factor S-II (TFIIS), central domain | 199 | 317 | IPR003618 | GO:0006351 | |
| Glsi10g1463 | 378 | ProSiteProfiles | TFIIS N-terminal domain profile. | 10 | 86 | IPR017923 | - | |
| Glsi10g1463 | 378 | CDD | Zn-ribbon_TFIIS | 326 | 363 | - | - | |
| Glsi10g1463 | 378 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
| Glsi10g1463 | 378 | ProSiteProfiles | TFIIS central domain profile. | 202 | 326 | IPR003618 | GO:0006351 | |
| Glsi10g1463 | 378 | SUPERFAMILY | Zinc beta-ribbon | 310 | 363 | - | - | |
| Glsi10g1463 | 378 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 14 | 362 | - | - | |
| Glsi10g1463 | 378 | NCBIfam | transcription elongation factor S-II | 14 | 363 | IPR006289 | GO:0003676|GO:0005634|GO:0006368 | |
| Glsi10g1463 | 378 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 329 | 374 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Glsi10g1463 | 378 | SMART | Cys4_2 | 331 | 369 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Glsi10g1463 | 378 | SMART | mid_6 | 204 | 309 | IPR003618 | GO:0006351 | |
| Glsi10g1463 | 378 | Gene3D | - | 184 | 300 | IPR036575 | GO:0006351 | |
| Glsi10g1463 | 378 | Pfam | TFIIS helical bundle-like domain | 34 | 83 | IPR017923 | - | |
| Glsi10g1463 | 378 | Coils | Coil | 293 | 313 | - | - | |
| Glsi10g1463 | 378 | CDD | TFIIS_I | 9 | 83 | - | - | |
| Glsi10g1463 | 378 | SMART | TFS2_5 | 8 | 85 | IPR003617 | GO:0005634 | |
| Glsi10g1463 | 378 | Pfam | Transcription factor S-II (TFIIS) | 331 | 363 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Glsi10g1463 | 378 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 3 | 98 | IPR035441 | - | |
| Glsi10g1463 | 378 | MobiDBLite | consensus disorder prediction | 90 | 110 | - | - | |
| Glsi10g1463 | 378 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 185 | 301 | IPR036575 | GO:0006351 | |
| Glsi10g1463 | 378 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | 99 | IPR035441 | - | |
| Glsi10g1463 | 378 | PIRSF | TFIIS | 2 | 364 | IPR035100 | - | |
| Glsi10g1463 | 378 | Gene3D | - | 301 | 365 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g1463 | Glsi-ChrGlsi10 | 9825160 | 9828212 | Wgd |
Transcription factors information