LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1458	ATGAAGCTCCAGTCCTCAGTTTTTGCACTTGTTCTGCTAAGCTTCTTACTGTCTTTCTTTGGCCTTGTTATATCTGACTTGAACTCTGATAGACAAGCACTCTTTGAGTTTGCTTCTAGTGTCCCACATGCCCGAAGGCTCAACTGGAATGATTCTGCTCCAATTTGTACCTCATGGGTTGGTGTGACTTGCAACTCAAATAAAACTCGGGTCATTGCTATCCATCTTCCAGGGGTTGGATTCAGAGGCCACATTCCAGAAAACACCATAGGAAAACTAGATGCCCTTAGGGTCCTGAGCCTTCACTCCAATGGTCTAAATGGAAATCTTCCTTCTGACATCCTCTCCATTCCTTCCCTCCAATATGTACACCTCCAGCACAATAACTTTTCAGGTCCAATTCCTTTCTCTGTCTCTCCTAAACTCGTTGCATTTGATATTTGTTTTAACTCCTTCTCTGGAGCTATCCCTGACTTCAACATCCCGAGCCTCAAATTCTTTAATTTGAGCTATAATAACTTGAGTGGCTCAATTCCAAATGCCATCCAAAAATTCCCTTACACTTCTTTTGTTGGGAACTCTCTCTTATGCGGGCCACCTCTCAATCATTGCTCTGCAATCTCCCCTTCTCCATCTCTATCTCCTCCCCCTGTTTATCTCCCACTCTCTCCAGCAGCTACACAAATTCAAAAAGCTACCACCCCAAAGAAAAGATTTGGATTGGCTCCTATACTTGCTCTAGCAATTGGGGGCTGTGCATTCCTCTTGTTCCTAGTTTTAGTAATCTGTTTATGCTGTTTCAAGAGGAAAAACGGTGAAAGAAGTGGCATACTGAAAGGAAAGGCGGCATCTTGCGCTGGAAAGACTGAGATTTCAAAGAGTTTTGGGAGTGGAGTACAAGAGGCTGAGAAGAATAAGTTGTACTTCTTTAGGGGTTGCTCTTATAGCTTTGACCTTGAGGATTTACTGAAGGCCTCGGCCGAAGTTCTTGGAAAGGGAAGTTATGGAACAGCTTACAAGGCTGTCTTGGAGGAGGGTACAACAGCGGTCGTTAAAAGGTTGCGGGAAGTTGTGGTCGGGAAGAAGGAGTTTGAGCAGCAGATGGAAATTGTGGGGAGCGTCGGACGGCACCCCAATGTCATGCCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTACTAGTTTACAGCTACATGCCAGACGGTAGCTTATTTGCCTCGTTACATGGAAACAAGGGTGCAGGAAGAAGTCCATTAGACTGGGATGCAAGAATGAAAATTGCGCTAGGAGTAGCCAAGGGAATTGGTTTCATCCACAGTGAGGGGGGTCCAAAATTTACACATGGCAACATCAAATCCTCCAATGTCCTCCTAAACCAAGACCTTGATGGCTGCATCTCTGATGTTGGATTGACTCCTCTGATGAACACCCCAGCAACCATGTCTAGAGCGAATGGGTACCGCGCCCCAGAGGTCACCGATTCCCGGAAGATCACCCACAAGTCTGATGTTTACAGCTTCGGTGTGCTGCTGCTGGAAATGCTGACAGGAAAAACCCCACTGAGATACCCTGGCCATGAGGATGCAGTCGATCTCCCAAGATGGGTGAGGTCTGTTGTTCGTGAGGAATGGACTGCCGAAGTTTTTGATGAGGAGCTATTGAGATCAGGCCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCCTGTGTGGCAAAGGTGCCAGAAACGAGGCCCACAATGGATGAAGCTGTGAGAATGATAGAGGAAATGAGGCAGCCTGAATTGAAGAACCGGCCATCCTCTGAGTCTGAATCTAATTTGCAGACACCATGA	1851	0.4625	MKLQSSVFALVLLSFLLSFFGLVISDLNSDRQALFEFASSVPHARRLNWNDSAPICTSWVGVTCNSNKTRVIAIHLPGVGFRGHIPENTIGKLDALRVLSLHSNGLNGNLPSDILSIPSLQYVHLQHNNFSGPIPFSVSPKLVAFDICFNSFSGAIPDFNIPSLKFFNLSYNNLSGSIPNAIQKFPYTSFVGNSLLCGPPLNHCSAISPSPSLSPPPVYLPLSPAATQIQKATTPKKRFGLAPILALAIGGCAFLLFLVLVICLCCFKRKNGERSGILKGKAASCAGKTEISKSFGSGVQEAEKNKLYFFRGCSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTAVVKRLREVVVGKKEFEQQMEIVGSVGRHPNVMPLRAYYYSKDEKLLVYSYMPDGSLFASLHGNKGAGRSPLDWDARMKIALGVAKGIGFIHSEGGPKFTHGNIKSSNVLLNQDLDGCISDVGLTPLMNTPATMSRANGYRAPEVTDSRKITHKSDVYSFGVLLLEMLTGKTPLRYPGHEDAVDLPRWVRSVVREEWTAEVFDEELLRSGQYVEEEMVQMLQIALACVAKVPETRPTMDEAVRMIEEMRQPELKNRPSSESESNLQTP	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1458	616	CDD	STKc_IRAK	330	596	-	-
	Glsi10g1458	616	Gene3D	Ribonuclease Inhibitor	27	206	IPR032675	-
	Glsi10g1458	616	FunFam	Leucine-rich repeat receptor-like protein kinase	29	139	-	-
	Glsi10g1458	616	Pfam	Protein kinase domain	328	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1458	616	FunFam	pollen receptor-like kinase 1	292	399	-	-
	Glsi10g1458	616	Gene3D	Transferase(Phosphotransferase) domain 1	400	614	-	-
	Glsi10g1458	616	Gene3D	Phosphorylase Kinase; domain 1	290	399	-	-
	Glsi10g1458	616	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	400	607	-	-
	Glsi10g1458	616	SUPERFAMILY	Protein kinase-like (PK-like)	328	603	IPR011009	-
	Glsi10g1458	616	PANTHER	OS05G0588300 PROTEIN	10	608	-	-
	Glsi10g1458	616	SUPERFAMILY	L domain-like	40	201	-	-
	Glsi10g1458	616	ProSitePatterns	Protein kinases ATP-binding region signature.	330	361	IPR017441	GO:0005524
	Glsi10g1458	616	MobiDBLite	consensus disorder prediction	596	616	-	-
	Glsi10g1458	616	ProSiteProfiles	Protein kinase domain profile.	324	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1458	616	Pfam	Leucine rich repeat N-terminal domain	28	65	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1458	Glsi-ChrGlsi10	9797452	9799669	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1458	8	611	Receptor kinase-like Gene Family	AT5G58300	58.070	0.0	703

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Glsi10g1458		Pkinase	4.9e-35	CL0016