Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1455 ATGCTGAAGCAGCGACAGTGGCCGAAGAAAATGAAGGAGAAGGAGGAGAAAAGTCAAAGTCAGGGAGCTGAAGAAGAAGAAGAAGAGGGGGAAATAATCAATGTCCGTCGCGAGGTGGACGATAACGAAGCGCGCTTAAACAGACACTTTCAGAGGGTTTTTAGCTTAGTGCAAAGCGTGAATACACAGCGTTCTCAGAGGGACGTAGCGATGGGGAGGAGACCTGCAAGGTGCTATAGACAAATTAAAAACAAACCTTACCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGGATGAAAAAGAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTTGTCAGCTGGGAGAAAGAAAATGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAGTATATGGCTAAATTTGCTGGAAAGGATGCATTCCACTTGAGAGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAAATGCTTTCATGTGCTGGAGCGGATAGGCTTCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTGGCTATTGGTCAGGTACTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTCCGCCGTGCTAAGTTTAAGTTCCCTGGGCGCCAAAAGATCATTGTTAGCAGAAAATGGGGGTTCACCAAGTTTAACCGTACTGACTATCTGAGGTACAAGTCAGAGAACAGGATTATGCCAGATGGTGTAAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTCTGTCTTCTGCGACTGCTTAG 876 0.4658 MLKQRQWPKKMKEKEEKSQSQGAEEEEEEGEIINVRREVDDNEARLNRHFQRVFSLVQSVNTQRSQRDVAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLRYKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1455 291 MobiDBLite consensus disorder prediction 1 21 - -
Glsi10g1455 291 ProSitePatterns Ribosomal protein L10e signature. 178 199 IPR018255 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 FunFam 60S ribosomal protein L10 71 276 - -
Glsi10g1455 291 Pfam Ribosomal protein L16p/L10e 82 236 IPR016180 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 CDD Ribosomal_L16_L10e 111 236 IPR016180 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 Gene3D Ribosomal protein L10e/L16 71 287 IPR036920 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 MobiDBLite consensus disorder prediction 1 35 - -
Glsi10g1455 291 NCBIfam 50S ribosomal protein L16 71 244 IPR001197 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 PANTHER 60S RIBOSOMAL PROTEIN L10 71 283 IPR001197 GO:0003735|GO:0005840|GO:0006412
Glsi10g1455 291 SUPERFAMILY Ribosomal protein L16p/L10e 74 243 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1455 Glsi-ChrGlsi10 9782507 9788470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1455 71 290 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 3.97e-145 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1455 10 9782507 9788470 Glsi08g0850 08 6376502 6381146 CCT