Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1454 ATGGAAACATCGGGGCATAATACAGACCAATACGCTATTTCTTCATCATCGTCATCTGCCAGAGGTGTAATTAACACTAACAGTAATAGTAGTGCCAGTGCTGTAGCATGGTATGGGATGCGGTTGCCCTCTGTCGGTCCCTTTCGTTCTCCACTCTCTTTTTTACTGGAATACTCGGGCATTCTCCGTTCAAGCTCGTCAACCCATGATTCTGAGGCTGTGATTGCCCACAACGGAGTTGCCGCTTCTGAATTACGACCCCACCGACAAAATCAATCGCTTGACCCAGCTGCTGGAACCGCCTGCAGTGGCGGCAACAGTAGTAGGACAGGGGAAGTTGCGATAAGGATTATTGGAGCTGGAGAACAGGAACACAATGTTGGTTTAGGTTCTGTTTCTTCACCCTCCCAAAATCAGCTTGGGGAAGTGGGTTTTGATGATCATGATGATTTGATGGGAAATAGAGGTGGAACGCCCGCATTGGACGACGATGCGGAGGGTCGCAGTGGAATCATGGTTCGTGAAAGAGTTCCTCTAGTGTCTTCATCTTCGTCGTTGGCTGGTAGTGGACAGGTTGATGTGGATTCTGGGAATGGCTTGGAAAGTAACACTAGGGATTCATCGTCTTACCAGAGGTATGATATTCAGCAGGTTGCTAAATGGATTGAGCAGATTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTCTTCATTCGACAGCATTTGCAAGGTTTCTTTCTCACAATATGGATTTCAGCTATGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTTTCTATTCTTGTCATTGTCGCTTTTGCCTTCATTTTTCATGTGATGAGCATTTATTGGTGGTATCAAAATGATGACCTTTTATACCCACTGGTCATGCTTCCTCCAAAGGCAACACCTCGTTTCTGGCATGCAATCTTCATCATTTTGGTTAATGATACACTGGTGCGGCAAGCAGCAATGTCTTTCAAGTGTTTGCTACTTATATATTATAAAAATGGCAGAGGTCACAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACACTACTGTTGTATCGTGCTTTGTTGCCAACGCCAGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTACTTAACTTTTAAGCTGACTTCTGTTGTTGAGAAGGTCCAATGCTTCTTTTCTGCCTTAAAAGCATTATCAAGAAAGGATGTTCATTATGGGGTTTATGCTACAATGGAGCAGGTAAATTCTGCTGGTGACCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCTATCCTATTGCGCTGTAAACACATTTTCTGCGAGGAGTGTGTGTCAGAATGGTTCGAGAGAGAAAGAACTTGTCCACTGTGCAGGGCATTGGTGAAACCTGCTGATCTGCGGACATTCGGGGATGGATCAACAAGTCTGTTTTTCCAATTATTTTAA 1515 0.4403 METSGHNTDQYAISSSSSSARGVINTNSNSSASAVAWYGMRLPSVGPFRSPLSFLLEYSGILRSSSSTHDSEAVIAHNGVAASELRPHRQNQSLDPAAGTACSGGNSSRTGEVAIRIIGAGEQEHNVGLGSVSSPSQNQLGEVGFDDHDDLMGNRGGTPALDDDAEGRSGIMVRERVPLVSSSSSLAGSGQVDVDSGNGLESNTRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQGFFLTIWISAMMFKSNEIVKKQTALKGDRKVSILVIVAFAFIFHVMSIYWWYQNDDLLYPLVMLPPKATPRFWHAIFIILVNDTLVRQAAMSFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSALKALSRKDVHYGVYATMEQVNSAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1454 504 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 504 IPR044235 GO:0061630|GO:1904294
Glsi10g1454 504 SUPERFAMILY RING/U-box 435 486 - -
Glsi10g1454 504 CDD RING-HC_RNFT1-like 441 481 - -
Glsi10g1454 504 ProSiteProfiles Zinc finger RING-type profile. 443 481 IPR001841 -
Glsi10g1454 504 ProSitePatterns Zinc finger RING-type signature. 458 467 IPR017907 -
Glsi10g1454 504 MobiDBLite consensus disorder prediction 1 23 - -
Glsi10g1454 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 491 IPR013083 -
Glsi10g1454 504 MobiDBLite consensus disorder prediction 182 206 - -
Glsi10g1454 504 SMART ring_2 443 480 IPR001841 -
Glsi10g1454 504 Pfam Zinc finger, C3HC4 type (RING finger) 441 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1454 Glsi-ChrGlsi10 9776486 9782176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1454 1 504 C3H Transcription Factor Family AT5G01960 58.020 0.0 563