Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1446 ATGGCTCCCAGCAGATCCCAGAAAGTCGTCCAAATGGAGGATGGAAAAGTGGACTTTGAAGAGCAGAAGAAGAAGAACGTCGCCACAGCTTTGCCGTTCTTTAAGCTCTTGAGCTATGCCGACTTAATAGACTGGACTCTGATGGGGTTGGGAACTCTGGGTTCCATTGTGCATGGCATGGCTTTTCCCGTTGGCTATCTCTTGCTAGGAAAAGCTCTTAATGCTTTTGGGAACAATATCAATGACACAGACGCCATGGTTAAAGCTCTTAAAAAGGTTGTACCCTATGTGTGGTACATGGCCTTCGCCACATTTCCTGCTGGAATACTTGAGACTGGGTGTTGGATGTACGCAAGTGAAAGACAGTTAGCAAGGCTCAGATTAGCATATCTAAGAGCAGTTCTTAGCCAAGAGATTGGAGCTTTTGATACAGAATTAACAAGTGGAAAAATTATCAGCGGAGTTAGCAACCACATGAGCATCATACAAGATGCCATTGGCGAGAAGTTGGGTCACTTCACTTCATGCTTTGCAACGTTCTTTTCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTTGCGCTGCTGTGTTTATTGGTTGTTCCTCTTATTCTTGTGATTGGGGCCACTTACACCAAGAGAATGAACAGCGTATCAGCCACCAAAATGCGTTCCCAGTCTGAAGTCACAGCTATGATAGAACAGACTATATCCCATATAAAAACGGTATATGCATTTGTTGGAGAGAGCTCTGCAATAAAATCCTTTACAGAGAACATGGACAAACAGTATATTATAAGCAAAGGAGAGGCACTCATAAAGGGAGTTGGAACAGGAATGTTCCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCACGGCCGGGAGAGCAAGTGGCGGAGACATTATTACTGCTGTAATGAGCATTTTATTTGGTGCCATATCTTTGACTTATGCTGCACCAGACATGCAAATTTTCAATCAGGCAAAAGCAGCAGGATATGAGGTTTTCGAAGTGATCCAAAGAAAGCCACTTATAAGTAATGAATCAGAAGGGAAGATGCCTGAGAAGATTGAAGGCCACATTGACATAAGGAATGTTCACTTTTCCTACCCATCTCGCCCGGAGAAACCTATCCTTCAAGGGTTGTCTCTGTCAATCCCTGCAGGGAAGACAGTGGCATTAGTTGGTAGCAGTGGGTGTGGAAAAAGTACTGTTATCTCCCTTGTTGCCAGATTTTATGACCCCTCAAAAGGAGAAATTTTCATTGATAACCAAAATATCAAGGATCTTGATCTGAAGTTCCTTCGAAGAAACATAGGAGCCGTTTCCCAAGAACCTTCGCTCTTTACAGGCACCATCAAGGATAACTTGAAAGTAGGAAAAATGGACGCAGATGATCGAGAGATACAGAATGCAGCCGAAATGTCAAATGCAAACTTTTTCATATCACAGCTTCCTGATCAGTACCTAACAGAGGTAGGACAAAGGGGCCTCCAATTATCAGGAGGCCAAAAACAAAGGATAGCAATAGCAAGAGCCATCCTGAAAAATCCTCCTATCCTTCTGCTTGATGAGGCTACCAGTGCCCTCGACTCAGAGTCAGAGAAGCTGGTTCAAGAAGCACTTGAGAAAGCTATGCGGGGAAGGACTGTCATCCTGATTGCACACAGGTTGTCAACTATCGTAAATGCAGATATGATTGTTGTTGTGCAGAACGGAGAAGTTGCAGAGATAGGAACACATAACAGTTTGCTAGAAACAAGCAGTTTCTATAATGCATTATTCAGCATGCAGAACCTTGAACCAATTCCTGACTTCAGAACTTCAAGTTGCAAAAATGGAATTTCGAAAGCCCACGAAGAAGATTCTTCTGAAGATACTAAACCACAAGAGAAGCAAATAGAGGTCAAGGAAAATCTCACCAAGTATTTTATGCAAGAGGAAGAGAAGAGCGGAAAAGAAAGAAATATATTTTTCAGAATCTGGTTTGGTTTAAGAAAGAGAGAGCTTGCAAAGACTGCTGTTGGCGCCTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCTGTGTTTGGATTCTACATCATCACCATTGGAGTAGCGTACTTCCAAGATGATGCAAAACGCAAAGTTGCATTGTATTCGGTTGTCTTCGCTGCAATAGGTTTACTTTCATTATTTAGTCACACCTTGCAACATTACTTCTTTGGGGTGGTTGGAGAAAAGGCCACGGGAAATCTCAGACGTGCTCTTTATTCAGTTGTGCTTCGCAATGAAGTAGGCTGGTTTGACAAACCTGAGAATAGTGTTGGTTCACTAACCTCACGAATCATCAATGACACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCTGTGATTGTGCAATGCATTTCCTCCATACTGATAGCAACTGTGGTCAGTTTGGTTGTTAACTGGAGAATGGGTTTGGTATCATGGGCTGTGATGCCCTGCCACTTCATAGGTGGCCTGATTCAAGCCAAGTCTGCCAAAGGATTCTCAAGCGACCACTCTGCTTCTCATTCTGATCTAGTTGCTCTTGCATCTGAGTCTACCACCAACATAAGGACTATAGCATCATTTTGCCATGAAGAGCACGTACTGAGGAAAGCCAAAACTTCACTGGACATCCCAAAGAAAAAGTGCAGAATAGAGAGCATCAAATATGGGATCATTCAAGGTTTCTCCCTTTGCTTATGGAACATCGCACATGCTGTTGCTTTGTGGTACACAACAATTTTGGTTGACAGACACCAATCCAGGTTTGAAGATGCCATAAGATCATACCAGATTTTTTCTCTCACAGTTCCTTCTATCACAGAACTATACACACTGATCCCAACTGTCATCTCTGCTATCAATATACTGAGCCCAGTATTCCAGACCCTTGACCGTGAAACTGAAATTGAACCAGATACACCAGAAGATAACATACAGCCCAAGAGGATACAAGGAAAAGTTGAGTTTCAGAATGTCAAGTTCAACTACCCATTAAGACCTGAGGTGACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATCGAAGGTGGCTTTTGTAGGGCCAAGTGGAGCTGGAAAATCGTCTGTACTGGCCCTTCTACTAAGATTCTATGATCCAAGAGAGGGAAAGGTATTCTTTGATGGGAAAGACATAAAAGAATACAATCTAAGGCGGTTAAGAACACAAATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTACTCTGTAAGAGAGAATATCTGCTATGGAAACAATGGGGCTTCTGAAAGTGAAATAGTGGAGGCATCAAGAGAGGCAAACATACATGAATTTGTTAGTAATCTACCGAATGGGTATAACACTGTTGTTGGGGAGAAAGGGTGCCAGCTTTCAGGAGGCCAGAAGCAAAGAATAGCAATTGCCAGAACCTTACTAAAGAAGCCTGCAGTTTTTCTCCTTGATGAAGCAACAAGTGCTCTTGATGCAGAGTCTGAAAGAACAGTAATAAGTGCTCTGAAAGCAATAAATCTAAAGGGAGGCAGTGGGTTGCATTCAAGAACAACCCAGATCACAATAGCGCATAGGCTTTCCACAATAATAAACTCAGATACCATAGTTGTTATGGAGAAAGGAAAAATCGTGGAGATGGGCTCCCACTCAACCTTGATACAATCAGAGGCAGGACTTTATTCAAGGTTATTCAAGTTGCAGAGCTTTGAAGAAAGCTGA 3768 0.4268 MAPSRSQKVVQMEDGKVDFEEQKKKNVATALPFFKLLSYADLIDWTLMGLGTLGSIVHGMAFPVGYLLLGKALNAFGNNINDTDAMVKALKKVVPYVWYMAFATFPAGILETGCWMYASERQLARLRLAYLRAVLSQEIGAFDTELTSGKIISGVSNHMSIIQDAIGEKLGHFTSCFATFFSGIVIAAICCWEVALLCLLVVPLILVIGATYTKRMNSVSATKMRSQSEVTAMIEQTISHIKTVYAFVGESSAIKSFTENMDKQYIISKGEALIKGVGTGMFQTVSFCSWALIVWVGAVVVTAGRASGGDIITAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFEVIQRKPLISNESEGKMPEKIEGHIDIRNVHFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVARFYDPSKGEIFIDNQNIKDLDLKFLRRNIGAVSQEPSLFTGTIKDNLKVGKMDADDREIQNAAEMSNANFFISQLPDQYLTEVGQRGLQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALEKAMRGRTVILIAHRLSTIVNADMIVVVQNGEVAEIGTHNSLLETSSFYNALFSMQNLEPIPDFRTSSCKNGISKAHEEDSSEDTKPQEKQIEVKENLTKYFMQEEEKSGKERNIFFRIWFGLRKRELAKTAVGAFAAAFSGISKPVFGFYIITIGVAYFQDDAKRKVALYSVVFAAIGLLSLFSHTLQHYFFGVVGEKATGNLRRALYSVVLRNEVGWFDKPENSVGSLTSRIINDTAMVKIIIADRMSVIVQCISSILIATVVSLVVNWRMGLVSWAVMPCHFIGGLIQAKSAKGFSSDHSASHSDLVALASESTTNIRTIASFCHEEHVLRKAKTSLDIPKKKCRIESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRHQSRFEDAIRSYQIFSLTVPSITELYTLIPTVISAINILSPVFQTLDRETEIEPDTPEDNIQPKRIQGKVEFQNVKFNYPLRPEVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPREGKVFFDGKDIKEYNLRRLRTQIGLVQQEPLLFNYSVRENICYGNNGASESEIVEASREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAVFLLDEATSALDAESERTVISALKAINLKGGSGLHSRTTQITIAHRLSTIINSDTIVVMEKGKIVEMGSHSTLIQSEAGLYSRLFKLQSFEES 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1446 1255 FunFam ABC multidrug transporter mdr4 1002 1252 - -
Glsi10g1446 1255 Gene3D ABC transporter type 1, transmembrane domain 35 965 IPR036640 GO:0005524|GO:0016020
Glsi10g1446 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Glsi10g1446 1255 Gene3D - 994 1255 IPR027417 -
Glsi10g1446 1255 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Glsi10g1446 1255 CDD ABC_MTABC3_MDL1_MDL2 1004 1250 - -
Glsi10g1446 1255 MobiDBLite consensus disorder prediction 621 641 - -
Glsi10g1446 1255 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Glsi10g1446 1255 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524|GO:0016887
Glsi10g1446 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 986 - -
Glsi10g1446 1255 SMART AAA_5 398 584 IPR003593 GO:0016887
Glsi10g1446 1255 SMART AAA_5 1031 1225 IPR003593 GO:0016887
Glsi10g1446 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1446 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1446 1255 PANTHER ABC TRANSPORTER B FAMILY 12 607 IPR039421 -
Glsi10g1446 1255 SUPERFAMILY ABC transporter transmembrane region 35 353 IPR036640 GO:0005524|GO:0016020
Glsi10g1446 1255 Gene3D - 361 609 IPR027417 -
Glsi10g1446 1255 Pfam ABC transporter 1022 1171 IPR003439 GO:0005524
Glsi10g1446 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1248 IPR003439 GO:0005524
Glsi10g1446 1255 FunFam ABC transporter B family member 4 361 614 - -
Glsi10g1446 1255 SUPERFAMILY ABC transporter transmembrane region 672 988 IPR036640 GO:0005524|GO:0016020
Glsi10g1446 1255 MobiDBLite consensus disorder prediction 624 641 - -
Glsi10g1446 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Glsi10g1446 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Glsi10g1446 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1250 IPR027417 -
Glsi10g1446 1255 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1446 1255 Pfam ABC transporter transmembrane region 685 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1446 1255 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1446 Glsi-ChrGlsi10 9732963 9739229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1446 21 1255 Calmodulin-binding Proteins AT2G36910 40.949 0.0 954