Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1433 ATGGCTTCCTTCTACTATAACCTATGGTTGTTTTGCTTGGTTAGTTTTCTAGCCTCAACAGGGAAATACCCAGCCGTTGCCTATTCAGCCAGTGATACTCCAATCAACGTGACTAAGCACTTCTTCTTCCCTGATTTCAGCATTAGCAATAATTCCAGAATTTCCCACGATGTGAAGCTCCTAGGCAGTGCCAGGTTCTCAGAAGAAAAGGGTGCTCTACAAATTCCCGATGAATCCCAAGACCCAGACATCAGATATCAAGCAGGTCGAGCCATCTATTCCTTCCCAATTCGCCTGCTAGATCCACAAACCAAAACCCCAGCTTCCTTTGAAACCACCTTCTCTTTTCTGTTGAACAATTCCAGTATCTCTGGCCAAAATGCTTATGGTGGTAGTGGCCTCACTTTCATTATCGTCCCTGATGAGTTCACGGTAGGAAGGCCAGGGCCTTGGCTTGCCATGCTCAACGATGCTTGTGAGAACAATTACAAAGCCGTGGCAGTAGAATTTGACACAAGAAGGAACCCAGAATTTGGAGATCCAAATGACAACCATGTAGGCATCAATTTAGGTACTATAATATCCTCTAAAATCATCAACGTTTCTGATGTTGGAGTGTCCCTTAAGGATGGTTTTGTTCATCGTGCTTGGATTACCTACGATGGTCCCAAGAAAAGAATGGACATTCGTCTTGGACTAGCCAACCGAGAAGATTATCCTTCCAAGCCCATTTTTTCAGAATCTCTGGATCTCTCACCCTTTCTAAACGAGTACATGTTTGTGGGGTTCTCAGCTTCCACAGGAAACCATACCCAAATCCACAACATACTGTCTTGGAACTTCACCTCTACCAGCCAAGCTGTTCTACGCTTCCCTTCAGCTGAAACTTGCGAGGATAAGATCTCACTTGAGAGTGGCACTGCAACTTCTAATAGTTCTCCGAAGTCTGAACCTTCGCGGAGCTTTTTAATCTTTGTGGCTGTAGTGGCATTGGCTCTGGCTGTTCTCCTCAGTTTCTATTTCAACAGTAAGCGCAGAAGAAATGCTGCTAAATCAAACATCTTGATGGAGGCAGAGAATCACCGACCAAGACCGCCCAACAAACCACGCCGCTTCACATTCTCTGAAATTTCCTCTGCCACTAGATCCTACAGTGAAATAGAGCTGCTGGGTAGTGATTCTAGAGGCGTATATTACAGAGGGAAGCTTCCTAATGACACCCAAATTGCTGTGAAAAGGCTCTCAGCTCAGTTTCTCAACTCACATCGGTCAGATAAGAGACGATTGTTGAAGGAAATCAAAGCTATCAGCCAGTTTCGCCACCCCAATTTGATTCCCATCAGGGGTTGGTGTCAAGATAGCCACGAAATCATGGTGGTCTATGACTTCTTCCCAAATGGTAGCCTAGACAAATGGCTATTTGGGGCTGGTTTTCTTCCATGGACTCGGCGATTCAAGGTTATAAAAGATGTAGCTGATGGCTTGAGCTTCCTCCACTCCAAACAACTCGCCCACAAGAACTTGAAATGTAGCAGTGTGTTCCTTGATGTCAACTTTAGAGCTATCTTGGGTGATTTTGGGCTCGTACTATTAGAGGCAGAATCGAGACAGTTTGAGTCAGTCGTGTGTCAAGGTGCAGATGTGTTTGAATTTGGTGTCTTTGTGTTGGAAGTGATAGCTGGAAGGAGTAGGGTAGAGAAAGAGCAGGGAAAACCAGAAGAGAGGAACTTACTGGATTTTGCTTGGAACTTGCATGAGATTGAGGAGAAAGTGAAGCTGTTGGATAGAAGAATGGGATCATTGATTAACTTGGAGCAGGCAATTCGTGTGCTGGAGATTGGGTTGCTTTGCACTCTGAATGAGAACAAAGGAAGGCCCTGTATGGAGCAAGTGGTGGAGTTCCTTAACATGGAGAGACCCATTCCCGAGCTGCCAAGAAGTCGCCCTGTTGCCTTGTTCCCCTATAGTAGCGCTAACTCTGGTCTTTGTAATACATATTCTTGTGCTACCTTTAAGTGA 2019 0.4517 MASFYYNLWLFCLVSFLASTGKYPAVAYSASDTPINVTKHFFFPDFSISNNSRISHDVKLLGSARFSEEKGALQIPDESQDPDIRYQAGRAIYSFPIRLLDPQTKTPASFETTFSFLLNNSSISGQNAYGGSGLTFIIVPDEFTVGRPGPWLAMLNDACENNYKAVAVEFDTRRNPEFGDPNDNHVGINLGTIISSKIINVSDVGVSLKDGFVHRAWITYDGPKKRMDIRLGLANREDYPSKPIFSESLDLSPFLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAVLRFPSAETCEDKISLESGTATSNSSPKSEPSRSFLIFVAVVALALAVLLSFYFNSKRRRNAAKSNILMEAENHRPRPPNKPRRFTFSEISSATRSYSEIELLGSDSRGVYYRGKLPNDTQIAVKRLSAQFLNSHRSDKRRLLKEIKAISQFRHPNLIPIRGWCQDSHEIMVVYDFFPNGSLDKWLFGAGFLPWTRRFKVIKDVADGLSFLHSKQLAHKNLKCSSVFLDVNFRAILGDFGLVLLEAESRQFESVVCQGADVFEFGVFVLEVIAGRSRVEKEQGKPEERNLLDFAWNLHEIEEKVKLLDRRMGSLINLEQAIRVLEIGLLCTLNENKGRPCMEQVVEFLNMERPIPELPRSRPVALFPYSSANSGLCNTYSCATFK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1433 672 Gene3D Phosphorylase Kinase; domain 1 343 463 - -
Glsi10g1433 672 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 38 291 - -
Glsi10g1433 672 Pfam Legume lectin domain 40 287 IPR001220 GO:0030246
Glsi10g1433 672 FunFam Lectin-domain containing receptor kinase A4.2 464 642 - -
Glsi10g1433 672 CDD lectin_legume_LecRK_Arcelin_ConA 40 284 IPR001220 GO:0030246
Glsi10g1433 672 ProSiteProfiles Protein kinase domain profile. 384 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1433 672 Gene3D Transferase(Phosphotransferase) domain 1 542 656 - -
Glsi10g1433 672 Gene3D Transferase(Phosphotransferase) domain 1 464 541 - -
Glsi10g1433 672 Gene3D - 37 289 - -
Glsi10g1433 672 SUPERFAMILY Protein kinase-like (PK-like) 362 649 IPR011009 -
Glsi10g1433 672 Pfam Protein tyrosine and serine/threonine kinase 388 530 IPR001245 GO:0004672|GO:0006468
Glsi10g1433 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 285 IPR013320 -
Glsi10g1433 672 PANTHER - 77 639 - -
Glsi10g1433 672 ProSitePatterns Legume lectins beta-chain signature. 166 172 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1433 Glsi-ChrGlsi10 9683596 9685614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1433 40 653 Receptor kinase-like Gene Family AT5G55830 30.804 2.03e-92 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi10g1433 Lectin_legB 3.5e-55 CL0004