Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1428 ATGGGTGCCGTCACATGTTATCAGCCGCGCCCGAATGAGATGGCCGTGTTGCCTTTGGATTCGCTGCCACTGGGGTTCAGATTTCGGCCAACGGACGAGGAGCTTATTGATTACTATCTGCGCCAGAAAATCAACGGCAATGGTGACGAGGTTTGGGTTATTCGGGAAATTGATGTTTGCAAATGGGAACCGTGGGATTTACCTGATTTATCCGTGGTACGGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGCAAGTATCCAAATGGGCATCGATTGAACCGAGCAACAACCCAAGGGTATTGGAAAGCAACGGGCAAGGATCGCAAAATAAAGTCTGGGACCAGCATAATTGGAATGAAGAAGACTTTAGTCTTCTATAGTGGACGTGCTCCCAAGGGGAAGAGGACCCATTGGGTTATGCATGAGTACCGTCCTACCCTAAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAAAAACAAGATGAGAGTCTTGAAGGCTCGAACTGTGTTGAAACGGAGAGGACTGTGTCAACTCCTACCACTGCTAATTACTCTCCAGAAGAAATACAGTCTGACACAGTTCTGCTTGCGGTATCCCCATCACTGGCTACAGAAGATGATAAGCTGCAGACTCCATTCTGTATCTCTGAGAACACTGAAGAAACCACTTCTAATGTTATAGCACCAGCTAACTGCCATAGTGACTGGTGTGATGCTTACAATGCACAAAATAAAACAGCTGCAGAGGATCCGCTGGTGAACCTTGACATTTTTAATGAACAAATAATGGGGCCCTTGGATGACAAACTGTTCTCCCCTTTACATGTGCATATGCCACCGGAATTTTATTATCCAGTGAGCAATGAGTATGATGGTCAGTGTGGTCCGCAACTTCTGTATGATACAAACGAGACAAATATTTCAGATTCCTTTGACTCAATTGTTAATTGGGATAAATTGTCCTATAAGGATTCCAGCGGTCAAAAGCCAGCCTCCACCTTTTTAACTTCTAGGGACAACCGATCTGGCAGTGATTCAGATCTGGAAATGGCCAATATAATGCGTCGGCAAGTATTGCAAGCTGCCTATTCTGGGGAGGCAATTGACATAAGGGCTCGTTCAATGATAGAGACAACTCCAGAATATCACAGTACCTTCGTCTCTGACCTTAGTTGTTATCAGGAGAAGAGCAATATGGGGTTTTTACAAAATAATTCTCAGACGGCTTTGTCATCTAATGTTGCTTTGGACCAAGTATACAATGTGGTCAATGGTTGTCAGGAATCAGGAAACTATGATACAACTTTTAGTGGTGATATTAGTACTGGAATCAGGAGAAGGACTCGCCAAGTACGAAATGAACAGTTTAACATGAACCCTGCGAACCAAGGTGATGCACCAAGAAGAATATTTTTTCTATTACCGGGGTCTCCACTTAGCTGCAATAAAATGGCAAAAGATGGGAGTTGTGGACAGGAAGATCAAGATTCAAAAGGGGAGAGTAAAGCTTCAGAAGATTATACTGCAGATGAGGATGCTACTGATACCGAGGCAGAGAGTGAACTCCAGAATTCTGAGTCAACTGACAGTAGTAAAATTTCTCAGCAATGTGTTAAACATGCAGATTTTATCTCTGGGTTGAAAGAGATATTAGTGTGCAAATCGGTCCGCCACACATCAAGGGCCTCTCCTCGTTGCACCACCTGGTCATCTACATTTGTATTCGCTGTCAGTTTAATGGTCATAGTGGTATTCTCAGCTAACACATGGGGAGGTATTAAAATTTTGAACTGCTAG 1836 0.4385 MGAVTCYQPRPNEMAVLPLDSLPLGFRFRPTDEELIDYYLRQKINGNGDEVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTQGYWKATGKDRKIKSGTSIIGMKKTLVFYSGRAPKGKRTHWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEGSNCVETERTVSTPTTANYSPEEIQSDTVLLAVSPSLATEDDKLQTPFCISENTEETTSNVIAPANCHSDWCDAYNAQNKTAAEDPLVNLDIFNEQIMGPLDDKLFSPLHVHMPPEFYYPVSNEYDGQCGPQLLYDTNETNISDSFDSIVNWDKLSYKDSSGQKPASTFLTSRDNRSGSDSDLEMANIMRRQVLQAAYSGEAIDIRARSMIETTPEYHSTFVSDLSCYQEKSNMGFLQNNSQTALSSNVALDQVYNVVNGCQESGNYDTTFSGDISTGIRRRTRQVRNEQFNMNPANQGDAPRRIFFLLPGSPLSCNKMAKDGSCGQEDQDSKGESKASEDYTADEDATDTEAESELQNSESTDSSKISQQCVKHADFISGLKEILVCKSVRHTSRASPRCTTWSSTFVFAVSLMVIVVFSANTWGGIKILNC 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1428 611 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Glsi10g1428 611 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 247 - -
Glsi10g1428 611 MobiDBLite consensus disorder prediction 497 546 - -
Glsi10g1428 611 MobiDBLite consensus disorder prediction 339 359 - -
Glsi10g1428 611 MobiDBLite consensus disorder prediction 502 522 - -
Glsi10g1428 611 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Glsi10g1428 611 MobiDBLite consensus disorder prediction 339 354 - -
Glsi10g1428 611 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Glsi10g1428 611 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Glsi10g1428 611 FunFam Nac domain-containing protein 86 31 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1428 Glsi-ChrGlsi10 9647260 9650339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1428 14 251 NAC Transcription Factor Family AT4G35580 58.333 4.06e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g1428 NAM 4.6e-36 No_clan