Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1420 ATGGGTTCTGCCGGTGAGACCCAGATAACTCCAACCCAAGTATCTGATGAAGAAGCAAACCTGTTCGCCATGCAATTAGCCAGTGCCTCTGTGCTTCCCATGATTCTCAAATCAGCTATAGAGCTGGATCTCTTGGAAATTATCGCCAAGGCTGGCCCTGGAGCTTACCTATCCCCCTCTGACATTGCCTCTCAGCTCCCAACCAGGAACCCAGACGCACCCATCATGCTGGACCGCATGTTGCGCCTCTTGGCTTGCTACAACATCCTCACTCACTCTCTGCGCACACTTCCTGACGGCAAGGTCGAGAGGATCTATGGTCTGGCCCCTGTTGCTAAATACTTGGTCAAGAATGAAGATGGTGTCTCCATTGCTGCTCTCAACCTCATGAATCAGGACAAAGTCCTCATGGAGAGCTGGTACCACTTGAAAGATGCAGTTCTTGAAGGTGGGATTCCATTCAACAAGGCTTATGGAATGACTGCCTTTGAGTACCATGGTACAGATCCAAGGTTCAACAAGGTTTTCAATAAGGGGATGTCTGATCACTCTACCATCACAATGAAGAAGATTCTTGAGACCTATACAGGCTTTGAGAGTCTCAAGTCTGTGGTTGATGTTGGTGGTGGGACTGGAGCTGTAGTTAACATGATTGTCTCTAAGTACCCCTCCATAAAGGGCATTAACTTTGACTTGCCCCATGTGATTGAAGATGCTCCATCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTCAGTGTTCCCAAAGCTGATGCCATTTTCATGAAGTGGATATGTCACGACTGGAGTGACGAGCACTGCTTGAAGTTTTTGAAGAACTGCTACGATGCACTTCCAGACAATGGGAAGGTGATTGTGGCCGAATGCATTCTTCCAGTCGCCCCAGACTCTAGCTTGGCCACAAAGGGTGTGGTTCACATTGATGTTATTATGCTGGCTCATAACCCAGGTGGAAAAGAGAGAACACAGAAAGAGTTTGAGGACTTGGCCAAGGGGGCTGGATTCCAAGGTTTCCGAGTTATGTGCTCCGCTTTTAACACTTACGTCATGGAATTTCTTAAGGTTTAA 1095 0.4767 MGSAGETQITPTQVSDEEANLFAMQLASASVLPMILKSAIELDLLEIIAKAGPGAYLSPSDIASQLPTRNPDAPIMLDRMLRLLACYNILTHSLRTLPDGKVERIYGLAPVAKYLVKNEDGVSIAALNLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFESLKSVVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYDALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFRVMCSAFNTYVMEFLKV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1420 364 Gene3D - 1 115 IPR036388 -
Glsi10g1420 364 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Glsi10g1420 364 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Glsi10g1420 364 CDD AdoMet_MTases 204 295 - -
Glsi10g1420 364 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Glsi10g1420 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Glsi10g1420 364 PANTHER O-METHYLTRANSFERASE 23 347 IPR016461 GO:0008168
Glsi10g1420 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
Glsi10g1420 364 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Glsi10g1420 364 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Glsi10g1420 364 FunFam Caffeic acid O-methyltransferase 116 363 - -
Glsi10g1420 364 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1420 Glsi-ChrGlsi10 9601368 9604161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1420 1 363 Monolignol Biosynthesis Gene Families AT5G54160 77.135 0.0 595