Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1417 ATGTTTCTCAAAAAACCTATGCGCGTAGCCCTGAGTGGTGATAACCTCAAAGCCACAAACGATTGCGAGACATCCCCAACGCTACACCACGTGTCGCAATCGACTAGATTTTGTGCTCCAATTTTGCTTCGCCCGCCTGGGATACTCTTGACTCTGCTACTGGAATTGATTCTTGGGAGAGAGAGAGAGAGAGGCGCTCGAAAGGTGTTAAAAATGGATGAGGTGATGTTGAGTGCTGAGAAGTTTCTGGAAGCGGCGGAGAGCGAGACCCAGAAGCACAAGGGGATGACAGAGGAGGTAGACAGCGGAACTGAGAGTAAAGGTGATCAATTGAATAATGGGTTGATGAGGTGGGAAAAGTTCTTGCCAAAGATGATATTGAGGGTTCTGTTGGTTGAAGCTGATGATTCCACCCGGCAGATTATAGCTGCGCTTCTCAGGAAATGCAACTACAGAGTGGCTGCTGTTCCTGATGGCTTGAAGGCGTGGGAAATACTGAAGGGAAAACCATACAATATTGATCTTATACTGACAGAAGTTGATTTGCCATCAATATCTGGCTATGCTCTTCTCACGTTAATCATGGAGCATGATATTTGCAAAAACATTCCTGTTATAATGATGTCCTCACAAGATTCAGTTAGCACAGTTTACAAATGCATGTTGAGAGGTGCTGCTGACTACCTTGTTAAGCCCCTTCGAAAAAATGAGCTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACTTCTGGTGTAAATGGCCCCCAAGAGGACAGTGTCGCACAACAGAGGGTTGAAGCCACTGCTGAAAACAATGCTCCTAGTAATTGTTCAAGTGGCGATGCTGCATGCATTCAAAGAAATAAAGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTACAAAGCCTGACTTAGAAGCTGAGAGTGCCCCCATGGATCACGTGCACGAACTTTCCCCTGTAAAACATGGTGAATCATCCCCAAAGGAAACAAAGATGCAGGAGGTTGAAAAGAGCATGCATTTAGGCCAGACACTGAGCATGCATGGAAGTCACGCAGGAGGATTAACTGTTGGGGGCTTCAAAAATGGTGAGACAAGTTCAGTTCGTGACAAGGATAGTGATCCAGAGCATTGTGGAAGTCCTGATACCGGGGTTGAAGCTCATGACAATCACTATCTTCAAATTACCTCTTCTAAGGAAGCTATTGACTTGATTGCAGCATTTCAAAATCATCCAAACTGCAGTCACAAAAGTTCCTCAGTTAATTGCACTGGCAAGTTTGACTTTTCTCCACAATTGGATCTTTCCTTGAGAAGATATCAACCAAGTAACTTTGAGAATGAAACCACTGAAGAAAACCATACCTTGATGCATTCTAATGCCTCGGCTTTCAAGCGGTATACTAACAGGCAAATACAAGCCCCACCTGCAGTGTTCATTAACTTCTGCGATCAAAACACAGAACAGAGAACAAATTGTGAGAAAAATATATCCAATGTTGTAGGCAATAACTCAGATAGTTCAACACCTAGTATGCAAAGAAGTATTATTTCTCCAGCTACAGTGCAATCAAAAGAATCTGAACTCACAACTTCACACTCCCAGCATGGGTTTTCTCTCCCAATTCCAGTTAAAGGTATAAGGTACAATGATCTATGTGCGGCCTATGTTTCTGTTCTTCCTCCGATGTTTTGTACGCAGTCTGCTCCTCCATCAATGCCAAGTCCAAGTTCAGTTCCAAACCTAGAATCAACCTTTCAAATGAATGCACGTCATCAGTCAAACATAAAAGAAAATAGTTCAGAGCAACTTTATGAAGCTGGTGGTCAAAATGGAAACAACAGAACAAACCAGATTGTGTACATGCAGGATCACAAATTGGAACATGTGGAGAATCGAAGTCATATCTCTCCTACAACTGATCAAAGTGCATGCAGTAGTTTCTGTAATGGAAATGCAAGCCACCTTAACAGTATTGGTTATGGAAGCAACTACGGAAGTAACAGCAATGTTGACCAGGTTGCCGCTGTCAGGGCAGCTACAGAGAGTAAGAATGAAGACCCCCCAAATAATGGGAGTTCTCATCGATCTATTCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTTTGAAAAGAAGGTTCGGTATGAGAGCAGAAAGAAACTCGCGGAGCAGCGTCCTAGAGTGAAAGGACAATTTGTTCGTCAAGTGCACCTTGATCCCTAG 2262 0.4328 MFLKKPMRVALSGDNLKATNDCETSPTLHHVSQSTRFCAPILLRPPGILLTLLLELILGRERERGARKVLKMDEVMLSAEKFLEAAESETQKHKGMTEEVDSGTESKGDQLNNGLMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCNYRVAAVPDGLKAWEILKGKPYNIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTSGVNGPQEDSVAQQRVEATAENNAPSNCSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESAPMDHVHELSPVKHGESSPKETKMQEVEKSMHLGQTLSMHGSHAGGLTVGGFKNGETSSVRDKDSDPEHCGSPDTGVEAHDNHYLQITSSKEAIDLIAAFQNHPNCSHKSSSVNCTGKFDFSPQLDLSLRRYQPSNFENETTEENHTLMHSNASAFKRYTNRQIQAPPAVFINFCDQNTEQRTNCEKNISNVVGNNSDSSTPSMQRSIISPATVQSKESELTTSHSQHGFSLPIPVKGIRYNDLCAAYVSVLPPMFCTQSAPPSMPSPSSVPNLESTFQMNARHQSNIKENSSEQLYEAGGQNGNNRTNQIVYMQDHKLEHVENRSHISPTTDQSACSSFCNGNASHLNSIGYGSNYGSNSNVDQVAAVRAATESKNEDPPNNGSSHRSIQREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQVHLDP 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1417 753 MobiDBLite consensus disorder prediction 371 390 - -
Glsi10g1417 753 PANTHER TWO-COMPONENT RESPONSE REGULATOR 128 402 IPR045279 GO:0009736
Glsi10g1417 753 ProSiteProfiles Response regulatory domain profile. 128 246 IPR001789 GO:0000160
Glsi10g1417 753 MobiDBLite consensus disorder prediction 297 393 - -
Glsi10g1417 753 MobiDBLite consensus disorder prediction 690 704 - -
Glsi10g1417 753 SUPERFAMILY CheY-like 127 253 IPR011006 -
Glsi10g1417 753 CDD psREC_PRR 129 232 - -
Glsi10g1417 753 ProSiteProfiles CCT domain profile. 706 748 IPR010402 GO:0005515
Glsi10g1417 753 MobiDBLite consensus disorder prediction 249 283 - -
Glsi10g1417 753 MobiDBLite consensus disorder prediction 87 108 - -
Glsi10g1417 753 MobiDBLite consensus disorder prediction 683 704 - -
Glsi10g1417 753 Pfam Response regulator receiver domain 129 240 IPR001789 GO:0000160
Glsi10g1417 753 Gene3D - 125 334 - -
Glsi10g1417 753 MobiDBLite consensus disorder prediction 312 342 - -
Glsi10g1417 753 MobiDBLite consensus disorder prediction 87 105 - -
Glsi10g1417 753 Pfam CCT motif 706 748 IPR010402 GO:0005515
Glsi10g1417 753 SMART REC_2 127 242 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1417 Glsi-ChrGlsi10 9574072 9579394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1417 406 566 Response Regulator Gene Family AT5G24470 28.070 7.95e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Glsi10g1417 Response_reg 5.2e-21 CL0304